General information
PDB ID 5VI8
Title STRUCTURE OF A MYCOBACTERIUM SMEGMATIS TRANSCRIPTION INITIATION COMPLEX WITH AN UPSTREAM-FORK PROMOTER FRAGMENT
PDB header TRANSCRIPTION
Date 2017-04-14
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.76
Kind dna
Organism SYNTHETIC CONSTRUCT
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA WebPDA
EDS
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5vi8.pdb JABCDEFT OP 0
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
RNA_pol_A_bac Domain 5.2e-26 1 No_clan A 52 169
RNA_pol_L Domain 3.4e-20 1 CL0509 A 24 219
RNA_pol_A_bac Domain 6.1e-26 1 No_clan B 52 169
RNA_pol_L Domain 4e-20 1 CL0509 B 24 219
RNA_pol_Rpb2_6 Domain 8.1e-159 1 CL0410 C 634 1053
RNA_pol_Rpb2_3 Domain 4.8e-29 1 No_clan C 429 497
RNA_pol_Rpb2_45 Domain 2.5e-28 1 No_clan C 507 573
RNA_pol_Rpb2_7 Domain 5.8e-26 1 No_clan C 1055 1131
RNA_pol_Rpb2_2 Domain 2.8e-17 1 No_clan C 172 370
RNA_pol_Rpb1_1 Domain 3.2e-82 1 No_clan D 4 417 O
RNA_pol_Rpb1_5 Domain 6.1e-37 1 No_clan D 842 1028
RNA_pol_Rpb1_2 Domain 5.9e-36 1 No_clan D 419 561
RNA_pol_Rpb1_3 Domain 1.3e-27 1 No_clan D 564 735
RNA_pol_Rpb1_5 Domain 0.0000000000000063 1 No_clan D 1053 1219
RNA_pol_Rpb1_4 Domain 0.0000019 1 No_clan D 748 841
Sigma70_r2 Domain 9.1e-23 1 CL0123 F 233 303 O
Sigma70_r4 Domain 1.3e-18 1 CL0123 F 401 454 OP
RNA_pol_A_CTD Domain 2.4e-26 1 CL0198 T 251 303 OP
RNA_pol_Rpb2_1 Family 3e-22 1 No_clan C 43 416
RNA_pol_Rpb6 Family 0.000000000000055 1 No_clan E 39 102
Sigma70_r3 Family 8.3e-26 1 CL0123 F 312 389 P
Sigma70_r1_2 Family 2.4e-16 1 No_clan F 164 197 O
RbpA Family 2.6e-29 1 No_clan J 26 106 O
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
pdb5vi8.pdb:   [ download sequences in FASTA format ]
O (dna): 
Click "SHOW" for view sequence
P (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
T (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2017

text