General information
PDB ID 1LWT
Title CRYSTAL STRUCTURE OF THE INTEIN HOMING ENDONUCLEASE PI-SCEI BOUND TO ITS SUBSTRATE DNA (CA2+ FREE)
PDB header HYDROLASE/DNA
Date 2002-06-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.2
Kind dna
Organism SACCHAROMYCES CEREVISIAE
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA WebPDA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1lwt.pdb A BC 0
Biounits:
1lwt.pdb1.pdb A BC 1
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
Hom_end_hint Domain 2.4e-74 1 CL0363 A 1 453 BC
Hom_end Domain 5.3e-35 1 CL0324 A 302 413 BC
Hom_end Domain 0.0000000000000011 1 CL0324 A 195 296 BC
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Hedgehog/intein (Hint) domain
    Superfamily: Hedgehog/intein (Hint) domain
      Family: Intein (protein splicing domain)
VMA1-derived endonuclease (VDE) PI-Scei intein A 1 180 -
Class: All beta proteins
  Fold: Hedgehog/intein (Hint) domain
    Superfamily: Hedgehog/intein (Hint) domain
      Family: Intein (protein splicing domain)
VMA1-derived endonuclease (VDE) PI-Scei intein A 416 454 -
Class: All beta proteins
  Fold: Hedgehog/intein (Hint) domain
    Superfamily: Hedgehog/intein (Hint) domain
      Family: Intein (protein splicing domain)
VMA1-derived endonuclease (VDE) PI-Scei intein A 1 180 BC -
Class: All beta proteins
  Fold: Hedgehog/intein (Hint) domain
    Superfamily: Hedgehog/intein (Hint) domain
      Family: Intein (protein splicing domain)
VMA1-derived endonuclease (VDE) PI-Scei intein A 416 454 BC -
Class: Alpha and beta proteins (a+b)
  Fold: Homing endonuclease-like
    Superfamily: Homing endonucleases
      Family: Intein endonuclease
VMA1-derived endonuclease (VDE) PI-SceI A 181 298 BC  S-Bb S-Mj L-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: Homing endonuclease-like
    Superfamily: Homing endonucleases
      Family: Intein endonuclease
VMA1-derived endonuclease (VDE) PI-SceI A 299 415 BC  H-Bb S-Bb S-Mj L-Bb L-Mj 
GO terms
Protein chains: GO type: GO description:
A=284-737 C endomembrane system
A=284-737 C vacuolar proton-transporting V-type ATPase, V1 domain
A=284-737 C fungal-type vacuole membrane
A=284-737 F endodeoxyribonuclease activity
A=284-737 F proton-transporting ATPase activity, rotational mechanism
A=284-737 F DNA binding
A=284-737 F ATP binding
A=284-737 F hydrogen ion transporting ATP synthase activity, rotational mechanism
A=284-737 P cellular protein metabolic process
A=284-737 P vacuolar acidification
A=284-737 P intein-mediated protein splicing
A=284-737 P intron homing
A=284-737 P ATP hydrolysis coupled proton transport
Sequences
Download file with secondary structure created by Stride  
1lwt.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
Click "SHOW" for view sequence
C (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2017

text