General information
PDB ID 1YF3
Title T4DAM IN COMPLEX WITH ADOHCY AND 13-MER OLIGONUCLEOTIDE MAKING NON- AND SEMI-SPECIFIC (~1/4) CONTACT
PDB header TRANSFERASE/DNA
Date 2004-12-30
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.29
Kind dna
Organism ENTEROBACTERIA PHAGE T4
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA WebPDA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1yf3.pdb AB CD 0
Biounits:
1yf3.pdb1.pdb AB CD 1
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
MethyltransfD12 Family 1.2e-48 1 CL0063 A 7 243 CD
MethyltransfD12 Family 5.7e-49 1 CL0063 B 7 252 CD
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: S-adenosyl-L-methionine-dependent methyltransferases
    Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
      Family: N6 adenine-specific DNA methylase, DAM
DNA methylase T4DAM A 1 259 CD -
Class: Alpha and beta proteins (a/b)
  Fold: S-adenosyl-L-methionine-dependent methyltransferases
    Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
      Family: N6 adenine-specific DNA methylase, DAM
DNA methylase T4DAM B 1 259 CD -
GO terms
Protein chains: GO type: GO description:
A/B=1-259 F nucleic acid binding
A/B=1-259 F site-specific DNA-methyltransferase (adenine-specific) activity
A/B=1-259 P DNA replication
Sequences
Download file with secondary structure created by Stride  
1yf3.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2017

text