General information
PDB ID 1YFJ
Title T4DAM IN COMPLEX WITH ADOHCY AND 15-MER OLIGONUCLEOTIDE SHOWING SEMI- SPECIFIC AND SPECIFIC CONTACT
PDB header TRANSFERASE/DNA
Date 2005-01-02
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.69
Kind dna
Organism ENTEROBACTERIA PHAGE T4
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1yfj.pdb ABCDEF 1234567890 0
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
MethyltransfD12 Family P04392_7-243 2.6e-49 1 CL0063 A 7 243 1423  H-Bb H-Mj L-Bb L-Mj 
MethyltransfD12 Family P04392_7-243 2.6e-49 1 CL0063 A 7 243 1423  H-Bb H-Mj H-Mn L-Bb L-Mj 
MethyltransfD12 Family P04392_7-243 2.6e-49 1 CL0063 A 7 243 1423  H-Bb H-Mj H-Mn L-Bb L-Mj 
MethyltransfD12 Family P04392_7-243 2.6e-49 1 CL0063 A 7 243 1423  L-Bb L-Mj 
MethyltransfD12 Family P04392_7-243 2.6e-49 1 CL0063 B 7 243 237814  H-Bb H-Mj L-Bb L-Mj 
MethyltransfD12 Family P04392_7-243 2.6e-49 1 CL0063 B 7 243 237814  H-Bb H-Mj H-Mn L-Bb L-Mj 
MethyltransfD12 Family P04392_7-243 2.6e-49 1 CL0063 B 7 243 237814  H-Bb H-Mj H-Mn L-Bb L-Mj 
MethyltransfD12 Family P04392_7-243 2.6e-49 1 CL0063 B 7 243 237814  L-Bb L-Mj 
MethyltransfD12 Family P04392_7-243 2.6e-49 1 CL0063 C 7 243 3456  H-Bb H-Mj L-Bb L-Mj 
MethyltransfD12 Family P04392_7-243 2.6e-49 1 CL0063 C 7 243 3456  H-Bb H-Mj H-Mn L-Bb L-Mj 
MethyltransfD12 Family P04392_7-243 2.6e-49 1 CL0063 C 7 243 3456  H-Bb H-Mj H-Mn L-Bb L-Mj 
MethyltransfD12 Family P04392_7-243 2.6e-49 1 CL0063 C 7 243 3456  L-Bb L-Mj 
MethyltransfD12 Family P04392_7-243 2.5e-49 1 CL0063 D 7 243 5690  H-Bb H-Mj L-Bb L-Mj 
MethyltransfD12 Family P04392_7-243 2.5e-49 1 CL0063 D 7 243 5690  H-Bb H-Mj H-Mn L-Bb L-Mj 
MethyltransfD12 Family P04392_7-243 2.5e-49 1 CL0063 D 7 243 5690  H-Bb H-Mj H-Mn L-Bb L-Mj 
MethyltransfD12 Family P04392_7-243 2.5e-49 1 CL0063 D 7 243 5690  L-Bb L-Mj 
MethyltransfD12 Family P04392_7-235 1.4e-49 1 CL0063 E 7 258 09   
MethyltransfD12 Family P04392_7-235 1.4e-49 1 CL0063 E 7 258 09   
MethyltransfD12 Family P04392_7-235 1.4e-49 1 CL0063 F 7 258 09   
MethyltransfD12 Family P04392_7-235 1.4e-49 1 CL0063 F 7 258 09   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: S-adenosyl-L-methionine-dependent methyltransferases
    Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
      Family: N6 adenine-specific DNA methylase, DAM
DNA methylase T4DAM A 1 259 1423 -
Class: Alpha and beta proteins (a/b)
  Fold: S-adenosyl-L-methionine-dependent methyltransferases
    Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
      Family: N6 adenine-specific DNA methylase, DAM
DNA methylase T4DAM B 1 259 237814 -
Class: Alpha and beta proteins (a/b)
  Fold: S-adenosyl-L-methionine-dependent methyltransferases
    Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
      Family: N6 adenine-specific DNA methylase, DAM
DNA methylase T4DAM C 1 259 3456 -
Class: Alpha and beta proteins (a/b)
  Fold: S-adenosyl-L-methionine-dependent methyltransferases
    Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
      Family: N6 adenine-specific DNA methylase, DAM
DNA methylase T4DAM D 1 259 5690 -
Class: Alpha and beta proteins (a/b)
  Fold: S-adenosyl-L-methionine-dependent methyltransferases
    Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
      Family: N6 adenine-specific DNA methylase, DAM
DNA methylase T4DAM E 1 259 09 -
Class: Alpha and beta proteins (a/b)
  Fold: S-adenosyl-L-methionine-dependent methyltransferases
    Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
      Family: N6 adenine-specific DNA methylase, DAM
DNA methylase T4DAM F 1 259 09 -
GO terms
Protein chains: GO type: GO description:
A/B/C/D/E/F=1-259 F nucleic acid binding
A/B/C/D/E/F=1-259 F site-specific DNA-methyltransferase (adenine-specific) activity
A/B/C/D/E/F=1-259 P DNA replication
Sequences
Download file with secondary structure created by Stride  
pdb1yfj.pdb:   [ download sequences in FASTA format ]
0 (dna): 
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1 (dna): 
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2 (dna): 
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3 (dna): 
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4 (dna): 
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5 (dna): 
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6 (dna): 
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7 (dna): 
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8 (dna): 
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9 (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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