General information
PDB ID 1YFL
Title T4DAM IN COMPLEX WITH SINEFUNGIN AND 16-MER OLIGONUCLEOTIDE SHOWING SEMI-SPECIFIC AND SPECIFIC CONTACT AND FLIPPED BASE
PDB header TRANSFERASE/DNA
Date 2005-01-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.09
Kind dna
Organism ENTEROBACTERIA PHAGE T4
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA WebPDA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1yfl.pdb ABDE FGHI 0
Biounits:
1yfl.pdb1.pdb A F 1
1yfl.pdb2.pdb B G 1
1yfl.pdb3.pdb D H 1
1yfl.pdb4.pdb E I 1
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
MethyltransfD12 Family 1.8e-49 1 CL0063 A 7 256 F
MethyltransfD12 Family 1.8e-49 1 CL0063 B 7 256 G
MethyltransfD12 Family 2.3e-49 1 CL0063 D 7 251 H
MethyltransfD12 Family 1.2e-49 1 CL0063 E 7 254 I
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: S-adenosyl-L-methionine-dependent methyltransferases
    Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
      Family: N6 adenine-specific DNA methylase, DAM
DNA methylase T4DAM A 1 259 F -
Class: Alpha and beta proteins (a/b)
  Fold: S-adenosyl-L-methionine-dependent methyltransferases
    Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
      Family: N6 adenine-specific DNA methylase, DAM
DNA methylase T4DAM B 1 259 G -
Class: Alpha and beta proteins (a/b)
  Fold: S-adenosyl-L-methionine-dependent methyltransferases
    Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
      Family: N6 adenine-specific DNA methylase, DAM
DNA methylase T4DAM D 1 259 H -
Class: Alpha and beta proteins (a/b)
  Fold: S-adenosyl-L-methionine-dependent methyltransferases
    Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
      Family: N6 adenine-specific DNA methylase, DAM
DNA methylase T4DAM E 1 259 I -
GO terms
Protein chains: GO type: GO description:
A/B/D/E=1-259 F nucleic acid binding
A/B/D/E=1-259 F site-specific DNA-methyltransferase (adenine-specific) activity
A/B/D/E=1-259 P DNA replication
Sequences
Download file with secondary structure created by Stride  
1yfl.pdb1.pdb:   [ download sequences in FASTA format ]
F (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
1yfl.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
1yfl.pdb3.pdb:   [ download sequences in FASTA format ]
H (dna): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
1yfl.pdb4.pdb:   [ download sequences in FASTA format ]
I (dna): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2017

text