General information
|
|||||
| PDB ID | 3PT6 |
|
|||
| Title | CRYSTAL STRUCTURE OF MOUSE DNMT1(650-1602) IN COMPLEX WITH DNA | ||||
| PDB header | TRANSFERASE/DNA | ||||
| Date | 2010-12-02 | ||||
| Experimental method | X-RAY DIFFRACTION | ||||
| Resolution (A) | 3 | ||||
| Kind | dna | ||||
| Organism | MUS MUSCULUS | ||||
|
|||||
|
Quick Links
|
||||||||||||||||||||
|
||||||||||||||||||||
|
Composition of PDB entry and biounits
|
|||||
| File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
| PDB entry: | |||||
| pdb3pt6.pdb | AB | CDIJ | 0 |
|
|
| Biounits: | |||||
| 3pt6.pdb1.pdb | A | CI | 1 |
|
|
| 3pt6.pdb2.pdb | B | DJ | 1 |
|
|
|
Pfam domains
|
|||||||||
| Name: | Type: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Action: |
DNA_methylase
|
Domain | 1.5e-47 | 1 |
CL0063
|
A | 1142 | 1596 | CI |
|
|
BAH
|
Domain | 5.5e-22 | 1 | No_clan | A | 935 | 1103 |
|
|
|
BAH
|
Domain | 4.4e-20 | 1 | No_clan | A | 758 | 884 |
|
|
|
zf-CXXC
|
Domain | 0.000000000000042 | 1 | No_clan | A | 651 | 694 | CI |
|
|
DNA_methylase
|
Domain | 1.5e-47 | 1 |
CL0063
|
B | 1142 | 1596 | D |
|
|
BAH
|
Domain | 5.5e-22 | 1 | No_clan | B | 935 | 1103 |
|
|
|
BAH
|
Domain | 3.9e-21 | 1 | No_clan | B | 758 | 884 |
|
|
|
zf-CXXC
|
Domain | 0.000000000000021 | 1 | No_clan | B | 650 | 694 | DJ |
|
|
SCOP domains
|
|||||||
| No SCOP domains | |||||||
| GO terms | ||
| Protein chains: | GO type: | GO description: |
| A/B=650-1602 | C | centromeric heterochromatin |
| A/B=650-1602 | C | replication fork |
| A/B=650-1602 | C | nucleus |
| A/B=650-1602 | C | cytoplasm |
| A/B=650-1602 | F | zinc ion binding |
| A/B=650-1602 | F | RNA binding |
| A/B=650-1602 | F | DNA (cytosine-5-)-methyltransferase activity |
| A/B=650-1602 | F | methyl-CpG binding |
| A/B=650-1602 | P | maintenance of DNA methylation |
| A/B=650-1602 | P | chromatin modification |
| A/B=650-1602 | P | gene silencing |
| A/B=650-1602 | P | transcription, DNA-dependent |
| A/B=650-1602 | P | regulation of cell proliferation |
| A/B=650-1602 | P | cellular response to amino acid stimulus |
| A/B=650-1602 | P | positive regulation of gene expression |
| A/B=650-1602 | P | positive regulation of histone H3-K4 methylation |
| A/B=650-1602 | P | negative regulation of histone H3-K9 methylation |
| A/B=650-1602 | P | negative regulation of transcription, DNA-dependent |
|
Sequences
|
|
Download file with secondary structure created by Stride
|
|
3pt6.pdb1.pdb:
[
download sequences in FASTA format
]
|
|
C (dna):
Click "SHOW" for view sequence
I (dna):
Click "SHOW" for view sequence
A (protein):
Click "SHOW" for view sequence
|
|
3pt6.pdb2.pdb:
[
download sequences in FASTA format
]
|
|
D (dna):
Click "SHOW" for view sequence
J (dna):
Click "SHOW" for view sequence
B (protein):
Click "SHOW" for view sequence
|
|
|
