General information
PDB ID 1FJL
Title HOMEODOMAIN FROM THE DROSOPHILA PAIRED PROTEIN BOUND TO A DNA OLIGONUCLEOTIDE
PDB header TRANSCRIPTION/DNA
Date 1995-12-17
Experimental method X-RAY DIFFRACTION
Resolution (A) 2
Kind dna
Organism DROSOPHILA MELANOGASTER
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1fjl.pdb ABC DEF 0
Biounits:
1fjl.pdb1.pdb AB DE 1
1fjl.pdb2.pdb C F 0
1fjl.bel1.pdb AB DE 0
1fjl.bel2.pdb AB DE 0
1fjl.bel3.pdb C F 2
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
Homeobox Domain 4.8e-24 1 CL0123 A 2 58 DE
Homeobox Domain 4.8e-24 1 CL0123 A 2 58 DE
Homeobox Domain 3.1e-24 1 CL0123 B 2 58 DE
Homeobox Domain 3.1e-24 1 CL0123 B 2 58 DE
Homeobox Domain 3.3e-24 1 CL0123 C 2 58 F
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
Paired protein A N/A N/A DE  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
Paired protein A N/A N/A DE  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
Paired protein A N/A N/A DE  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
Paired protein A N/A N/A DE  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
Paired protein B N/A N/A DE  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
Paired protein B N/A N/A DE  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
Paired protein B N/A N/A DE  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
Paired protein B N/A N/A DE  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
Paired protein C N/A N/A F -
GO terms
Protein chains: GO type: GO description:
A/B/C=196-276 C nucleus
A/B/C=196-276 F RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
A/B/C=196-276 F RNA polymerase II regulatory region sequence-specific DNA binding
A/B/C=196-276 P positive regulation of transcription from RNA polymerase II promoter
A/B/C=196-276 P periodic partitioning by pair rule gene
Sequences
Download file with secondary structure created by Stride  
1fjl.bel1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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A (protein): 
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B (protein): 
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1fjl.bel2.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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A (protein): 
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B (protein): 
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1fjl.bel3.pdb:   [ download sequences in FASTA format ]
F (dna): 
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C (protein): 
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