General information
PDB ID 1HF0
Title CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF OCT-1 BOUND TO DNA AS A DIMER
PDB header TRANSCRIPTION
Date 2000-11-27
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind dna
Organism HOMO SAPIENS
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1hf0.pdb AB MN 0
Biounits:
1hf0.pdb1.pdb AB MN 1
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
Pou Domain 8.6e-38 1 CL0123 A 6 75 MN
Homeobox Domain 1.4e-17 1 CL0123 A 102 158 MN
Pou Domain 8.6e-38 1 CL0123 B 6 75 MN
Homeobox Domain 1.4e-17 1 CL0123 B 102 158 MN
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
Oct-1 POU Homeodomain A 102 159 MN  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: lambda repressor-like DNA-binding domains
    Superfamily: lambda repressor-like DNA-binding domains
      Family: POU-specific domain
Oct-1 A 6 75 MN  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
Oct-1 POU Homeodomain B 102 159 MN  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: lambda repressor-like DNA-binding domains
    Superfamily: lambda repressor-like DNA-binding domains
      Family: POU-specific domain
Oct-1 B 6 75 MN  H-Bb H-Mj L-Bb 
GO terms
Protein chains: GO type: GO description:
A/B=280-437 C transcription factor complex
A/B=280-437 C nucleoplasm
A/B=280-437 F sequence-specific DNA binding
A/B=280-437 F sequence-specific DNA binding transcription factor activity
A/B=280-437 P lens induction in camera-type eye
A/B=280-437 P olfactory placode formation
A/B=280-437 P positive regulation of transcription from RNA polymerase II promoter
A/B=280-437 P transcription from RNA polymerase III promoter
A/B=280-437 P negative regulation of transcription, DNA-dependent
Sequences
Download file with secondary structure created by Stride  
1hf0.pdb1.pdb:   [ download sequences in FASTA format ]
M (dna): 
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N (dna): 
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A (protein): 
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B (protein): 
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