General information
PDB ID 1K61
Title MATALPHA2 HOMEODOMAIN BOUND TO DNA
PDB header TRANSCRIPTION/DNA
Date 2001-10-14
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.1
Kind dna
Organism
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1k61.pdb ABCD EF 0
Biounits:
1k61.pdb1.pdb ABCD EF 1
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
Homeobox Domain 0.00000000034 1 CL0123 A 132 189 EF
Homeobox Domain 0.00000000032 1 CL0123 B 132 189 EF
Homeobox Domain 0.00000000044 1 CL0123 C 134 189 EF
Homeobox Domain 0.0000000003 1 CL0123 D 132 189 EF
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
mat alpha2 Homeodomain A N/A N/A EF  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
mat alpha2 Homeodomain B N/A N/A EF  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
mat alpha2 Homeodomain C N/A N/A EF  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
mat alpha2 Homeodomain D N/A N/A EF  H-Bb H-Mj L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
A/B/C/D=132-191 C nucleus
A/B/C/D=132-191 F sequence-specific DNA binding
A/B/C/D=132-191 F sequence-specific DNA binding transcription factor activity
A/B/C/D=132-191 P transcription, DNA-dependent
A/B/C/D=132-191 P donor selection
Sequences
Download file with secondary structure created by Stride  
1k61.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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