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Composition of PDB entry and biounits
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File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
PDB entry: | |||||
pdb1nh3.pdb | A | BCD | 0 |
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Biounits: | |||||
1nh3.pdb1.pdb | A | BCD | 1 |
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Pfam domains
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Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
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Domain | P11387_432-626 | 1.1e-88 | 1 |
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A | 432 | 751 | D | H-Bb L-Bb |
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Family | P11387_215-429 | 9e-102 | 1 | No_clan | A | 215 | 429 | BCD | S-Bb S-Mj L-Bb L-Mj |
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Family | P11387_720-765 | 2.2e-20 | 1 | No_clan | A | 620 | 765 |
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SCOP domains
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Classification: | Protein: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
Eukaryotic DNA topoisomerase I, catalytic core | A | 431 | 626 | H-Bb L-Bb |
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Eukaryotic DNA topoisomerase I, catalytic core | A | 431 | 626 | D | H-Bb L-Bb |
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Eukaryotic DNA topoisomerase I, catalytic core | A | 719 | 765 | - |
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Eukaryotic DNA topoisomerase I, catalytic core | A | 719 | 765 | D | - |
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Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | A | 203 | 430 | BCD | S-Bb S-Mj L-Bb L-Mj |
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GO terms | ||
Protein chains: | GO type: | GO description: |
A=203-765 | C | fibrillar center |
A=203-765 | C | nucleolus |
A=203-765 | C | nucleoplasm |
A=203-765 | C | nucleus |
A=203-765 | C | P-body |
A=203-765 | C | perikaryon |
A=203-765 | C | protein-DNA complex |
A=203-765 | C | replication fork protection complex |
A=203-765 | F | ATP binding |
A=203-765 | F | chromatin binding |
A=203-765 | F | DNA binding |
A=203-765 | F | DNA topoisomerase type I (single strand cut, ATP-independent) activity |
A=203-765 | F | double-stranded DNA binding |
A=203-765 | F | protein domain specific binding |
A=203-765 | F | protein serine/threonine kinase activity |
A=203-765 | F | RNA binding |
A=203-765 | F | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
A=203-765 | F | single-stranded DNA binding |
A=203-765 | F | supercoiled DNA binding |
A=203-765 | P | chromatin remodeling |
A=203-765 | P | chromosome segregation |
A=203-765 | P | circadian regulation of gene expression |
A=203-765 | P | circadian rhythm |
A=203-765 | P | DNA replication |
A=203-765 | P | DNA topological change |
A=203-765 | P | embryonic cleavage |
A=203-765 | P | peptidyl-serine phosphorylation |
A=203-765 | P | phosphorylation |
A=203-765 | P | programmed cell death |
A=203-765 | P | response to drug |
A=203-765 | P | viral process |
Sequences
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1nh3.pdb1.pdb:
[
download sequences in FASTA format
]
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B (dna):
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C (dna):
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D (dna):
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A (protein):
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