General information
PDB ID 1PUF
Title CRYSTAL STRUCTURE OF HOXA9 AND PBX1 HOMEODOMAINS BOUND TO DNA
PDB header TRANSCRIPTION/DNA
Date 2003-06-24
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.9
Kind dna
Organism HOMO SAPIENS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA WebPDA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1puf.pdb AB DE 0
Biounits:
1puf.pdb1.pdb AB DE 1
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
Homeobox Domain 6.8e-22 1 CL0123 A 206 262 DE
Homeobox Domain 4.7e-21 1 CL0123 B 234 293 DE
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
Homeobox protein hox-a9 A N/A N/A DE  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
pbx1 B N/A N/A DE  H-Bb H-Mj L-Bb 
GO terms
Protein chains: GO type: GO description:
A=193-269 C cytoplasm
A=193-269 C transcription factor complex
A=193-269 F sequence-specific DNA binding
A=193-269 F sequence-specific DNA binding transcription factor activity
A=193-269 P proximal/distal pattern formation
A=193-269 P anterior/posterior pattern specification
A=193-269 P embryonic forelimb morphogenesis
A=193-269 P definitive hemopoiesis
A=193-269 P transcription, DNA-dependent
A=193-269 P mammary gland development
A=193-269 P embryonic skeletal system development
B=233-305 C nucleus
B=233-305 F DNA binding
B=233-305 P cell differentiation
B=233-305 P negative regulation of sequence-specific DNA binding transcription factor activity
B=233-305 P steroid biosynthetic process
B=233-305 P sex differentiation
Sequences
Download file with secondary structure created by Stride  
1puf.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
Click "SHOW" for view sequence
E (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2017

text