General information
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| PDB ID | 1RYS |
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| Title | REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION | ||||
| PDB header | TRANSFERASE/DNA | ||||
| Date | 2003-12-22 | ||||
| Experimental method | X-RAY DIFFRACTION | ||||
| Resolution (A) | 2.03 | ||||
| Kind | dna | ||||
| Organism | SULFOLOBUS SOLFATARICUS | ||||
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Quick Links
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Composition of PDB entry and biounits
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| File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
| PDB entry: | |||||
| pdb1rys.pdb | AB | CDEF | 0 |
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| Biounits: | |||||
| 1rys.pdb1.pdb | A | CD | 1 |
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| 1rys.pdb2.pdb | B | EF | 1 |
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Pfam domains
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| Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
IMS
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Family | Q97W02_6-156 | 4.6e-45 | 1 | No_clan | A | 6 | 156 | D |
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IMS
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Family | Q97W02_6-156 | 4.6e-45 | 1 | No_clan | B | 6 | 156 | EF | H-Bb L-Bb |
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IMS_HHH
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Motif | Q97W02_168-199 | 0.0000003 | 1 |
CL0198
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A | 168 | 199 | C | H-Bb L-Bb |
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IMS_HHH
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Motif | Q97W02_168-199 | 0.0000003 | 1 |
CL0198
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B | 168 | 199 | E | H-Bb L-Bb |
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SCOP domains
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| Classification: | Protein: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
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Class: Alpha and beta proteins (a+b)
Fold: Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain
Family: Lesion bypass DNA polymerase (Y-family), little finger domain
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DinB homolog (DBH) | A | 241 | 341 | CD | - |
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Class: Multi-domain proteins (alpha and beta)
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: Lesion bypass DNA polymerase (Y-family), catalytic domain
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DinB homolog (DBH) | A | 1 | 240 | CD | - |
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Class: Alpha and beta proteins (a+b)
Fold: Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain
Family: Lesion bypass DNA polymerase (Y-family), little finger domain
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DinB homolog (DBH) | B | 241 | 341 | EF | - |
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Class: Multi-domain proteins (alpha and beta)
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: Lesion bypass DNA polymerase (Y-family), catalytic domain
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DinB homolog (DBH) | B | 1 | 240 | EF | - |
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| GO terms | ||
| Protein chains: | GO type: | GO description: |
| A/B=1-352 | C | cytoplasm |
| A/B=1-352 | F | DNA-directed DNA polymerase activity |
| A/B=1-352 | F | damaged DNA binding |
| A/B=1-352 | F | metal ion binding |
| A/B=1-352 | P | DNA replication |
| A/B=1-352 | P | DNA repair |
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Sequences
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Download file with secondary structure created by Stride
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1rys.pdb1.pdb:
[
download sequences in FASTA format
]
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C (dna):
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D (dna):
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A (protein):
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1rys.pdb2.pdb:
[
download sequences in FASTA format
]
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E (dna):
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F (dna):
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B (protein):
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