General information
PDB ID 1A3Q
Title HUMAN NF-KAPPA-B P52 BOUND TO DNA
PDB header TRANSCRIPTION/DNA
Date 1998-01-23
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.1
Kind dna
Organism HOMO SAPIENS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1a3q.pdb AB CD 0
Biounits:
1a3q.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RHD_DNA_bind Domain Q00653_40-220 7.5e-62 1 CL0073 A 40 220 CD  S-Bb S-Mj L-Bb L-Mj 
RHD_dimer Domain Q00653_229-327 1.7e-39 1 CL0159 A 229 327 C  L-Bb 
RHD_DNA_bind Domain Q00653_40-220 7.5e-62 1 CL0073 B 40 220 CD  H-Bb H-Mj S-Mj L-Bb L-Mj 
RHD_dimer Domain Q00653_229-327 1.7e-39 1 CL0159 B 229 327 D  L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: E set domains
      Family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
p52 subunit of NF-kappa B (NFKB) A 227 327 C  L-Bb 
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: E set domains
      Family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
p52 subunit of NF-kappa B (NFKB) B 227 327 D  L-Bb 
Class: All beta proteins
  Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
    Superfamily: p53-like transcription factors
      Family: Rel/Dorsal transcription factors, DNA-binding domain
p52 subunit of NF-kappa B (NFKB), N-terminal domain A 37 226 CD  S-Bb S-Mj L-Bb L-Mj 
Class: All beta proteins
  Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
    Superfamily: p53-like transcription factors
      Family: Rel/Dorsal transcription factors, DNA-binding domain
p52 subunit of NF-kappa B (NFKB), N-terminal domain B 37 226 CD  H-Bb H-Mj L-Bb L-Mj 
GO terms
Protein chains: GO type: GO description:
A/B=37-327 C cytosol
A/B=37-327 C Bcl3/NF-kappaB2 complex
A/B=37-327 C nucleoplasm
A/B=37-327 F sequence-specific DNA binding transcription factor activity
A/B=37-327 F transcription coactivator activity
A/B=37-327 F DNA binding
A/B=37-327 P toll-like receptor 2 signaling pathway
A/B=37-327 P innate immune response
A/B=37-327 P spleen development
A/B=37-327 P extracellular matrix organization
A/B=37-327 P Toll signaling pathway
A/B=37-327 P positive regulation of type I interferon production
A/B=37-327 P MyD88-dependent toll-like receptor signaling pathway
A/B=37-327 P toll-like receptor 4 signaling pathway
A/B=37-327 P transcription, DNA-dependent
A/B=37-327 P positive regulation of NF-kappaB transcription factor activity
A/B=37-327 P germinal center formation
A/B=37-327 P toll-like receptor 3 signaling pathway
A/B=37-327 P follicular dendritic cell differentiation
A/B=37-327 P TRIF-dependent toll-like receptor signaling pathway
A/B=37-327 P toll-like receptor 1 signaling pathway
Sequences
Download file with secondary structure created by Stride  
1a3q.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text