General information
PDB ID 1AOI
Title COMPLEX BETWEEN NUCLEOSOME CORE PARTICLE (H3,H4,H2A,H2B) AND 146 BP LONG DNA FRAGMENT
PDB header DNA BINDING PROTEIN/DNA
Date 1997-07-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind dna
Organism XENOPUS LAEVIS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1aoi.pdb ABCDEFGH IJ 0
Biounits:
1aoi.pdb1.pdb ABCDEFGH IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P02302_39-132 7.1e-46 1 CL0012 A 38 131 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_18-99 0.0000000095 1 CL0012 B 24 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06897_5-91 1.2e-16 1 CL0012 C 4 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_28-102 7.3e-23 1 CL0012 D 24 98 IJ  H-Bb S-Bb L-Bb L-Mn 
Histone Domain P02302_21-132 5.2e-48 1 CL0012 E 20 131 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_18-99 0.00000001 1 CL0012 F 20 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06897_13-91 5.3e-16 1 CL0012 G 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_28-102 7.3e-23 1 CL0012 H 24 98 IJ  H-Bb S-Bb L-Bb 
Histone_H2A_C Family P06897_92-120 2.4e-17 1 No_clan C 91 118   
Histone_H2A_C Family P06897_92-120 2.6e-18 1 No_clan G 91 119 I  L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2A C N/A N/A IJ -
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2A G N/A N/A IJ -
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2B D N/A N/A IJ -
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2B H N/A N/A IJ -
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H3 A N/A N/A IJ -
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H3 E N/A N/A IJ -
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H4 B N/A N/A IJ -
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H4 F N/A N/A IJ -
GO terms
Protein chains: GO type: GO description:
D/H=28-126 C nucleus
D/H=28-126 C nucleosome
D/H=28-126 F DNA binding
D/H=28-126 P nucleosome assembly
Sequences
Download file with secondary structure created by Stride  
1aoi.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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