General information
PDB ID 1C04
Title IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI
PDB header RIBOSOME
Date 1999-07-14
Experimental method X-RAY DIFFRACTION
Resolution (A) 5
Kind rna
Organism HALOARCULA MARISMORTUI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1c04.pdb ABCD EF 0
Biounits:
1c04.pdb1.pdb ABCD EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L2_C Domain P04257_125-195 2.2e-26 1 CL0107 A 124 194   
Ribosomal_L2 Domain P04257_61-118 3.9e-23 1 CL0021 A 60 117   
Ribosomal_L6 Domain P02391_11-82 9.8e-27 1 No_clan B 10 81   
Ribosomal_L6 Domain P02391_90-165 8.9e-22 1 No_clan B 89 164   
Ribosomal_L11 Domain P56210_63-129 1.2e-26 1 No_clan C 6 72 E   
Ribosomal_L14 Domain P04450_1-122 4.3e-55 1 No_clan D 1 122   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit A N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit B N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit C N/A N/A E -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit D N/A N/A -
GO terms
Protein chains: GO type: GO description:
A=46-145 C large ribosomal subunit
C=79-88 C ribosome
C=79-88 F structural constituent of ribosome
C=79-88 F rRNA binding
C=79-88 P translation
Sequences
Download file with secondary structure created by Stride  
1c04.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (rna): 
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F (rna): 
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