General information
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| PDB ID | 1CDW |
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| Title | HUMAN TBP CORE DOMAIN COMPLEXED WITH DNA | ||||
| PDB header | TRANSCRIPTION/DNA | ||||
| Date | 1996-04-11 | ||||
| Experimental method | X-RAY DIFFRACTION | ||||
| Resolution (A) | 1.9 | ||||
| Kind | dna | ||||
| Organism | HOMO SAPIENS | ||||
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Quick Links
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Composition of PDB entry and biounits
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| File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
| PDB entry: | |||||
| pdb1cdw.pdb | A | BC | 0 |
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| Biounits: | |||||
| 1cdw.pdb1.pdb | A | BC | 1 |
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Pfam domains
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| Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
TBP
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Domain | P20226_162-244 | 2.2e-32 | 1 |
CL0407
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A | 158 | 240 | BC | S-Bb S-Mn L-Bb L-Mn |
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TBP
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Domain | P20226_252-335 | 8.7e-32 | 1 |
CL0407
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A | 248 | 331 | BC | S-Bb S-Mn L-Bb L-Mj L-Mn |
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SCOP domains
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| Classification: | Protein: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
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Class: Alpha and beta proteins (a+b)
Fold: TBP-like
Superfamily: TATA-box binding protein-like
Family: TATA-box binding protein (TBP), C-terminal domain
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TATA-box binding protein (TBP), C-terminal domain | A | 155 | 252 | BC | S-Bb S-Mn L-Bb L-Mn |
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Class: Alpha and beta proteins (a+b)
Fold: TBP-like
Superfamily: TATA-box binding protein-like
Family: TATA-box binding protein (TBP), C-terminal domain
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TATA-box binding protein (TBP), C-terminal domain | A | 253 | 333 | BC | S-Bb S-Mn L-Bb L-Mn |
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| GO terms | ||
| Protein chains: | GO type: | GO description: |
| A=159-337 | C | transcription factor TFIID complex |
| A=159-337 | C | male pronucleus |
| A=159-337 | C | transcription factor TFIIA complex |
| A=159-337 | C | nuclear euchromatin |
| A=159-337 | C | cytoplasm |
| A=159-337 | C | female pronucleus |
| A=159-337 | F | transcription regulatory region DNA binding |
| A=159-337 | F | sequence-specific DNA binding transcription factor activity |
| A=159-337 | P | transcription elongation from RNA polymerase II promoter |
| A=159-337 | P | virus-host interaction |
| A=159-337 | P | transcription initiation from RNA polymerase II promoter |
| A=159-337 | P | cell death |
| A=159-337 | P | positive regulation of transcription, DNA-dependent |
| A=159-337 | P | transcription from RNA polymerase III promoter |
| A=159-337 | P | viral reproduction |
| A=159-337 | P | spermatogenesis |
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Sequences
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Download file with secondary structure created by Stride
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1cdw.pdb1.pdb:
[
download sequences in FASTA format
]
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B (dna):
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C (dna):
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A (protein):
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