General information
PDB ID 1CDW
Title HUMAN TBP CORE DOMAIN COMPLEXED WITH DNA
PDB header TRANSCRIPTION/DNA
Date 1996-04-11
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.9
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1cdw.pdb A BC 0
Biounits:
1cdw.pdb1.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TBP Domain P20226_162-244 1.4e-32 1 CL0407 A 158 240 BC  S-Bb S-Mn L-Bb L-Mn 
TBP Domain P20226_252-335 9.8e-32 1 CL0407 A 248 331 BC  S-Bb S-Mn L-Bb L-Mj L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain A 155 252 BC  S-Bb S-Mn L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain A 253 333 BC  S-Bb S-Mn L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
A=159-337 C cytoplasm
A=159-337 C female pronucleus
A=159-337 C male pronucleus
A=159-337 C nuclear chromatin
A=159-337 C nuclear euchromatin
A=159-337 C nucleoplasm
A=159-337 C nucleus
A=159-337 C protein-containing complex
A=159-337 C transcription factor TFIIA complex
A=159-337 C transcription factor TFIID complex
A=159-337 C transcription factor TFIIIB complex
A=159-337 C transcription preinitiation complex
A=159-337 C transcription regulator complex
A=159-337 F aryl hydrocarbon receptor binding
A=159-337 F core promoter sequence-specific DNA binding
A=159-337 F DNA-binding transcription factor activity
A=159-337 F enzyme binding
A=159-337 F repressing transcription factor binding
A=159-337 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A=159-337 F RNA polymerase II core promoter sequence-specific DNA binding
A=159-337 F RNA polymerase II general transcription initiation factor activity
A=159-337 F RNA polymerase II general transcription initiation factor binding
A=159-337 F RNA polymerase II repressing transcription factor binding
A=159-337 F RNA polymerase III general transcription initiation factor activity
A=159-337 F RNA polymerase III transcription regulatory region sequence-specific DNA binding
A=159-337 F TFIIB-class transcription factor binding
A=159-337 F transcription factor binding
A=159-337 F transcription regulatory region sequence-specific DNA binding
A=159-337 P positive regulation of gene expression, epigenetic
A=159-337 P positive regulation of transcription, DNA-templated
A=159-337 P regulation of signal transduction by p53 class mediator
A=159-337 P RNA polymerase II preinitiation complex assembly
A=159-337 P RNA polymerase III preinitiation complex assembly
A=159-337 P snRNA transcription by RNA polymerase II
A=159-337 P spermatogenesis
A=159-337 P termination of RNA polymerase I transcription
A=159-337 P transcription by RNA polymerase II
A=159-337 P transcription by RNA polymerase III
A=159-337 P transcription elongation from RNA polymerase I promoter
A=159-337 P transcription initiation from RNA polymerase I promoter
A=159-337 P transcription initiation from RNA polymerase II promoter
A=159-337 P viral process
Sequences
Download file with secondary structure created by Stride  
1cdw.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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