General information
PDB ID 1CKT
Title CRYSTAL STRUCTURE OF HMG1 DOMAIN A BOUND TO A CISPLATIN-MODIFIED DNA DUPLEX
PDB header GENE REGULATION/DNA
Date 1999-04-23
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.5
Kind dna
Organism RATTUS NORVEGICUS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1ckt.pdb A BC 0
Biounits:
1ckt.pdb1.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HMG_box_2 Domain P63159_8-78 2e-27 1 CL0114 A 7 77 BC  H-Bb H-Mj H-Mn L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: HMG-box
    Superfamily: HMG-box
      Family: HMG-box
High mobility group protein 1, HMG1 A N/A N/A BC  H-Bb H-Mn L-Bb 
GO terms
Protein chains: GO type: GO description:
A=8-77 C chromosome
A=8-77 C extracellular space
A=8-77 C cytoplasm
A=8-77 C nucleus
A=8-77 F crossed form four-way junction DNA binding
A=8-77 F DNA binding, bending
A=8-77 F peptide binding
A=8-77 F open form four-way junction DNA binding
A=8-77 F double-stranded DNA binding
A=8-77 F single-stranded DNA binding
A=8-77 F 5S rRNA binding
A=8-77 F glycolipid binding
A=8-77 F bent DNA binding
A=8-77 F heparin binding
A=8-77 P response to lipopolysaccharide
A=8-77 P cellular response to interleukin-1
A=8-77 P neuron projection development
A=8-77 P actin cytoskeleton reorganization
A=8-77 P positive regulation of neuron projection development
A=8-77 P positive regulation of mesenchymal cell proliferation
A=8-77 P myoblast proliferation
A=8-77 P cell morphogenesis
A=8-77 P male-specific defense response to bacterium
A=8-77 P DNA geometric change
A=8-77 P positive regulation of myoblast differentiation
A=8-77 P circadian rhythm
A=8-77 P positive regulation of smooth muscle cell migration
A=8-77 P positive regulation of mitotic cell cycle
A=8-77 P response to glucose stimulus
A=8-77 P induction of positive chemotaxis
A=8-77 P response to interferon-gamma
A=8-77 P chemotaxis
A=8-77 P response to insulin stimulus
A=8-77 P response to drug
A=8-77 P response to heat
A=8-77 P negative regulation of DNA replication
A=8-77 P positive regulation of myeloid cell apoptotic process
A=8-77 P regulation of inflammatory response
Sequences
Download file with secondary structure created by Stride  
1ckt.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
Click "SHOW" for view sequence
C (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text