General information
PDB ID 1D3U
Title TATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/BRE+TATA- BOX COMPLEX FROM PYROCOCCUS WOESEI
PDB header GENE REGULATION/DNA
Date 1999-10-01
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.4
Kind dna
Organism PYROCOCCUS WOESEI
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1d3u.pdb AB CD 0
Biounits:
1d3u.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TBP Domain P62001_99-181 3.6e-27 1 CL0407 A 99 181 CD  S-Bb S-Mn L-Bb L-Mn 
TBP Domain P62001_8-90 4.8e-26 1 CL0407 A 8 90 CD  S-Bb S-Mj S-Mn L-Bb 
TFIIB Domain P61999_212-282 6.4e-25 1 CL0065 B 1212 1282 CD  H-Bb H-Mj L-Bb L-Mj 
TFIIB Domain P61999_116-186 2.3e-20 1 CL0065 B 1116 1186 CD  H-Bb 
Sigma70_r4 Domain 0.00058 0 CL0123 B 1254 1294 CD
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: Cyclin-like
    Superfamily: Cyclin-like
      Family: Transcription factor IIB (TFIIB), core domain
Transcription factor IIB (TFIIB), core domain B 1100 1205 CD  H-Bb 
Class: All alpha proteins
  Fold: Cyclin-like
    Superfamily: Cyclin-like
      Family: Transcription factor IIB (TFIIB), core domain
Transcription factor IIB (TFIIB), core domain B 1206 1300 CD  H-Bb H-Mj L-Bb L-Mj 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain A 1 92 CD  S-Bb S-Mn L-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain A 93 181 CD  S-Bb S-Mn L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
A=1-181 F DNA binding
A=1-181 P transcription initiation from RNA polymerase II promoter
B=101-300 F zinc ion binding
B=101-300 F translation initiation factor activity
B=101-300 P regulation of transcription, DNA-dependent
B=101-300 P DNA-dependent transcription, initiation
Sequences
Download file with secondary structure created by Stride  
1d3u.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text