General information
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| PDB ID | 1D8Y |
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| Title | CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA | ||||
| PDB header | TRANSFERASE/DNA | ||||
| Date | 1999-10-26 | ||||
| Experimental method | X-RAY DIFFRACTION | ||||
| Resolution (A) | 2.08 | ||||
| Kind | dna | ||||
| Organism | ESCHERICHIA COLI | ||||
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Quick Links
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Composition of PDB entry and biounits
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| File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
| PDB entry: | |||||
| pdb1d8y.pdb | A | B | 0 |
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| Biounits: | |||||
| 1d8y.pdb1.pdb | A | B | 1 |
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Pfam domains
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| Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
DNA_pol_A_exo1
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Domain | P00582_330-517 | 1.7e-42 | 1 |
CL0219
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A | 330 | 517 | B |
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DNA_pol_A
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Family | P00582_549-926 | 8.9e-161 | 1 | No_clan | A | 549 | 926 | B |
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SCOP domains
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| Classification: | Protein: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
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Class: Alpha and beta proteins (a/b)
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease
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Exonuclease domain of prokaryotic DNA polymerase | A | 324 | 518 | B | - |
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Class: Multi-domain proteins (alpha and beta)
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: DNA polymerase I
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DNA polymerase I (Klenow fragment) | A | 519 | 928 | B | - |
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| GO terms | ||
| Protein chains: | GO type: | GO description: |
| A=325-928 | C | intracellular |
| A=325-928 | F | DNA-directed DNA polymerase activity |
| A=325-928 | F | 3'-5' exonuclease activity |
| A=325-928 | F | 5'-3' exonuclease activity |
| A=325-928 | F | DNA binding |
| A=325-928 | P | DNA repair |
| A=325-928 | P | DNA-dependent DNA replication |
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Sequences
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Download file with secondary structure created by Stride
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1d8y.pdb1.pdb:
[
download sequences in FASTA format
]
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B (dna):
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A (protein):
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