General information
PDB ID 1D8Y
Title CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA
PDB header TRANSFERASE/DNA
Date 1999-10-26
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.08
Kind dna
Organism ESCHERICHIA COLI
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CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1d8y.pdb A B 0
Biounits:
1d8y.pdb1.pdb A B 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_A_exo1 Domain P00582_330-517 1.7e-42 1 CL0219 A 330 517 B   
DNA_pol_A Family P00582_549-926 8.9e-161 1 No_clan A 549 926 B   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: Ribonuclease H-like motif
    Superfamily: Ribonuclease H-like
      Family: DnaQ-like 3'-5' exonuclease
Exonuclease domain of prokaryotic DNA polymerase A 324 518 B -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: DNA polymerase I
DNA polymerase I (Klenow fragment) A 519 928 B -
GO terms
Protein chains: GO type: GO description:
A=325-928 C intracellular
A=325-928 F DNA-directed DNA polymerase activity
A=325-928 F 3'-5' exonuclease activity
A=325-928 F 5'-3' exonuclease activity
A=325-928 F DNA binding
A=325-928 P DNA repair
A=325-928 P DNA-dependent DNA replication
Sequences
Download file with secondary structure created by Stride  
1d8y.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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A (protein): 
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