General information
PDB ID 1DDL
Title DESMODIUM YELLOW MOTTLE TYMOVIRUS
PDB header VIRUS/RNA
Date 1999-11-10
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind rna
Organism DESMODIUM YELLOW MOTTLE VIRUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1ddl.pdb ABC DE 0
Biounits:
1ddl.pdb1.pdb ABC DE 60
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Tymo_coat Domain O89511_17-188 4.6e-41 1 CL0055 A 8 177 DE   
Tymo_coat Domain O89511_17-188 4.6e-41 1 CL0055 B 8 177 D   
Tymo_coat Domain O89511_17-188 7.4e-41 1 CL0055 C 15 177 D   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Tymoviridae-like VP
Tymovirus coat protein A N/A N/A DE -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Tymoviridae-like VP
Tymovirus coat protein B N/A N/A D -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Tymoviridae-like VP
Tymovirus coat protein C N/A N/A D -
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
1ddl.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (rna): 
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E (rna): 
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