General information
PDB ID 1DIZ
Title CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNA
PDB header HYDROLASE/DNA
Date 1999-11-30
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.5
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1diz.pdb AB CDEF 0
Biounits:
1diz.pdb1.pdb A EF 1
1diz.pdb2.pdb B CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
AlkA_N Domain P04395_1-112 2.8e-28 1 CL0407 A 1 112   
HhH-GPD Domain P04395_118-266 0.00000000073 1 CL0198 A 118 266 EF   
AlkA_N Domain P04395_1-112 2.8e-28 1 CL0407 B 1 112   
HhH-GPD Domain P04395_118-266 0.00000000073 1 CL0198 B 118 266 CD   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA-glycosylase
    Superfamily: DNA-glycosylase
      Family: DNA repair glycosylase, 2 C-terminal domains
3-Methyladenine DNA glycosylase II (gene alkA or aidA) A 100 282 EF  H-Bb L-Bb L-Mj 
Class: All alpha proteins
  Fold: DNA-glycosylase
    Superfamily: DNA-glycosylase
      Family: DNA repair glycosylase, 2 C-terminal domains
3-Methyladenine DNA glycosylase II (gene alkA or aidA) B 100 282 CD  H-Bb H-Mj L-Bb L-Mj 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: DNA repair glycosylase, N-terminal domain
3-Methyladenine DNA glycosylase II (gene alkA or aidA) A 1 99 -
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: DNA repair glycosylase, N-terminal domain
3-Methyladenine DNA glycosylase II (gene alkA or aidA) B 1 99 -
GO terms
Protein chains: GO type: GO description:
A/B=1-282 C cytoplasm
A/B=1-282 F DNA-3-methylguanine glycosylase activity
A/B=1-282 F DNA-7-methylguanine glycosylase activity
A/B=1-282 F DNA-7-methyladenine glycosylase activity
A/B=1-282 F DNA-3-methyladenine glycosylase activity
A/B=1-282 F alkylbase DNA N-glycosylase activity
A/B=1-282 P base-excision repair
A/B=1-282 P DNA dealkylation involved in DNA repair
Sequences
Download file with secondary structure created by Stride  
1diz.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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A (protein): 
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1diz.pdb2.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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B (protein): 
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