General information
PDB ID 1E7J
Title HMG-D COMPLEXED TO A BULGE DNA
PDB header PROTEIN/DNA
Date 2000-08-29
Experimental method SOLUTION NMR
Resolution (A) N/A
Kind dna
Organism DROSOPHILA MELANOGASTER
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1e7j.pdb A BC 10
NMR models:
1e7j.MDL1.pdb A BC 1
1e7j.MDL2.pdb A BC 1
1e7j.MDL3.pdb A BC 1
1e7j.MDL4.pdb A BC 1
1e7j.MDL5.pdb A BC 1
1e7j.MDL6.pdb A BC 1
1e7j.MDL7.pdb A BC 1
1e7j.MDL8.pdb A BC 1
1e7j.MDL9.pdb A BC 1
1e7j.MDL10.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HMG_box Domain Q05783_5-71 3.2e-21 1 CL0114 A 5 71 BC  H-Bb H-Mj H-Mn L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: HMG-box
    Superfamily: HMG-box
      Family: HMG-box
HMG-D A N/A N/A BC -
GO terms
Protein chains: GO type: GO description:
A=1-74 C chromosome
A=1-74 C cytoplasm
A=1-74 C nucleus
A=1-74 F AT DNA binding
A=1-74 F chromatin binding
A=1-74 F DNA binding
A=1-74 F DNA binding, bending
A=1-74 F transcription factor binding
A=1-74 P chromatin organization
A=1-74 P chromatin remodeling
A=1-74 P DNA recombination
A=1-74 P positive regulation of innate immune response
A=1-74 P positive regulation of transcription by RNA polymerase II
A=1-74 P regulation of transcription by RNA polymerase II
A=1-74 P regulation of transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
1e7j.MDL1.pdb:   [ download sequences in FASTA format ]
B (dna): 
Click "SHOW" for view sequence
C (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text