General information
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| PDB ID | 1E7K |
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| Title | CRYSTAL STRUCTURE OF THE SPLICEOSOMAL 15.5KD PROTEIN BOUND TO A U4 SNRNA FRAGMENT | ||||
| PDB header | RNA-BINDING PROTEIN | ||||
| Date | 2000-08-29 | ||||
| Experimental method | X-RAY DIFFRACTION | ||||
| Resolution (A) | 2.9 | ||||
| Kind | rna | ||||
| Organism | HOMO SAPIENS | ||||
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Quick Links
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Composition of PDB entry and biounits
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| File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
| PDB entry: | |||||
| pdb1e7k.pdb | AB | CD | 0 |
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| Biounits: | |||||
| 1e7k.pdb1.pdb | A | C | 1 |
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| 1e7k.pdb2.pdb | B | D | 1 |
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Pfam domains
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| Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
Ribosomal_L7Ae
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Domain | P55769_20-114 | 2.2e-25 | 1 |
CL0101
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A | 20 | 114 | C |
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Ribosomal_L7Ae
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Domain | P55769_20-114 | 2.1e-25 | 1 |
CL0101
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B | 20 | 114 | D |
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SCOP domains
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| Classification: | Protein: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
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Class: Alpha and beta proteins (a+b)
Fold: Bacillus chorismate mutase-like
Superfamily: L30e-like
Family: L30e/L7ae ribosomal proteins
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Spliceosomal 15.5kd protein | A | N/A | N/A | C | - |
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Class: Alpha and beta proteins (a+b)
Fold: Bacillus chorismate mutase-like
Superfamily: L30e-like
Family: L30e/L7ae ribosomal proteins
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Spliceosomal 15.5kd protein | B | N/A | N/A | D | - |
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| GO terms | ||
| Protein chains: | GO type: | GO description: |
| A/B=1-128 | C | box C/D snoRNP complex |
| A/B=1-128 | C | dense fibrillar component |
| A/B=1-128 | C | nucleolus |
| A/B=1-128 | C | nucleoplasm |
| A/B=1-128 | C | nucleus |
| A/B=1-128 | C | precatalytic spliceosome |
| A/B=1-128 | C | protein-containing complex |
| A/B=1-128 | C | small-subunit processome |
| A/B=1-128 | C | U2-type precatalytic spliceosome |
| A/B=1-128 | C | U4/U6 x U5 tri-snRNP complex |
| A/B=1-128 | C | U4atac snRNP |
| A/B=1-128 | F | ATPase binding |
| A/B=1-128 | F | box C/D snoRNA binding |
| A/B=1-128 | F | RNA binding |
| A/B=1-128 | F | U3 snoRNA binding |
| A/B=1-128 | F | U4 snRNA binding |
| A/B=1-128 | F | U4atac snRNA binding |
| A/B=1-128 | P | box C/D snoRNP assembly |
| A/B=1-128 | P | maturation of LSU-rRNA |
| A/B=1-128 | P | maturation of SSU-rRNA |
| A/B=1-128 | P | mRNA splicing, via spliceosome |
| A/B=1-128 | P | rRNA processing |
| A/B=1-128 | P | single fertilization |
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Sequences
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Download file with secondary structure created by Stride
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1e7k.pdb1.pdb:
[
download sequences in FASTA format
]
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A (protein):
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C (rna):
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1e7k.pdb2.pdb:
[
download sequences in FASTA format
]
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B (protein):
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D (rna):
Click "SHOW" for view sequence
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