General information
PDB ID 1EBM
Title CRYSTAL STRUCTURE OF THE HUMAN 8-OXOGUANINE GLYCOSYLASE (HOGG1) BOUND TO A SUBSTRATE OLIGONUCLEOTIDE
PDB header LYASE/DNA
Date 2000-01-24
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.1
Kind dna
Organism HOMO SAPIENS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1ebm.pdb A CD 0
Biounits:
1ebm.pdb1.pdb A CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HhH-GPD Domain O15527_142-301 3.3e-20 1 CL0198 A 142 301 CD   
OGG_N Family O15527_25-141 4.7e-34 1 CL0407 A 25 141   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA-glycosylase
    Superfamily: DNA-glycosylase
      Family: DNA repair glycosylase, 2 C-terminal domains
8-oxoguanine glycosylase A 136 325 CD  H-Bb L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: DNA repair glycosylase, N-terminal domain
8-oxoguanine glycosylase A 9 135 -
GO terms
Protein chains: GO type: GO description:
A=12-325 C mitochondrion
A=12-325 C nuclear speck
A=12-325 C nuclear matrix
A=12-325 C cytoplasm
A=12-325 F endonuclease activity
A=12-325 F damaged DNA binding
A=12-325 F oxidized purine nucleobase lesion DNA N-glycosylase activity
A=12-325 P regulation of transcription, DNA-dependent
A=12-325 P response to radiation
A=12-325 P nucleotide-excision repair
A=12-325 P depurination
A=12-325 P response to oxidative stress
A=12-325 P regulation of protein import into nucleus, translocation
Sequences
Download file with secondary structure created by Stride  
1ebm.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text