General information
PDB ID 1EFW
Title CRYSTAL STRUCTURE OF ASPARTYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED TO TRNAASP FROM ESCHERICHIA COLI
PDB header LIGASE/RNA
Date 2000-02-10
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind rna
Organism ESCHERICHIA COLI, THERMUS THERMOPHILUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1efw.pdb AB CD 0
Biounits:
1efw.pdb1.pdb A C 1
1efw.pdb2.pdb B D 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
tRNA-synt_2 Domain P36419_123-552 5.1e-110 1 CL0040 A 123 552 C   
GAD Domain P36419_312-400 5.7e-25 1 CL0250 A 312 400 C   
tRNA_anti-codon Domain P36419_19-100 0.000000000000073 1 CL0021 A 19 100 C   
tRNA-synt_2 Domain P36419_123-552 5.1e-110 1 CL0040 B 123 552   
GAD Domain P36419_312-400 5.7e-25 1 CL0250 B 312 400   
tRNA_anti-codon Domain P36419_19-100 0.000000000000073 1 CL0021 B 19 100 D   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Anticodon-binding domain
Aspartyl-tRNA synthetase (AspRS) A 1 104 C -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Anticodon-binding domain
Aspartyl-tRNA synthetase (AspRS) B 1 104 D -
Class: Alpha and beta proteins (a+b)
  Fold: DCoH-like
    Superfamily: GAD domain-like
      Family: GAD domain
Prokaryotic AspRS, insert domain A 295 414 C -
Class: Alpha and beta proteins (a+b)
  Fold: DCoH-like
    Superfamily: GAD domain-like
      Family: GAD domain
Prokaryotic AspRS, insert domain B 295 414 -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) A 105 294 C -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) A 415 580 C -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) A 105 294 -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) A 415 580 -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) B 105 294 -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) B 415 580 -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) B 105 294 -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) B 415 580 -
GO terms
Protein chains: GO type: GO description:
A/B=1-580 C cytoplasm
A/B=1-580 F nucleic acid binding
A/B=1-580 F ATP binding
A/B=1-580 F aspartate-tRNA ligase activity
A/B=1-580 P tRNA aminoacylation for protein translation
Sequences
Download file with secondary structure created by Stride  
1efw.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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C (rna): 
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1efw.pdb2.pdb:   [ download sequences in FASTA format ]
B (protein): 
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D (rna): 
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