General information
PDB ID 1F66
Title 2.6 A CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLE CONTAINING THE VARIANT HISTONE H2A.Z
PDB header STRUCTURAL PROTEIN/DNA
Date 2000-06-20
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.6
Kind dna
Organism XENOPUS LAEVIS, MUS MUSCULUS, HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1f66.pdb ABCDEFGH IJ 0
Biounits:
1f66.pdb1.pdb ABCDEFGH IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_34-132 1.6e-46 1 CL0012 A 436 531 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62806_24-99 0.0000000088 1 CL0012 B 25 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P0C0S5_17-94 4.1e-18 1 CL0012 C 816 893 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_28-102 6.3e-22 1 CL0012 D 1228 1298 IJ  H-Bb S-Bb L-Bb 
Histone Domain P84233_34-132 4.4e-47 1 CL0012 E 633 731 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62806_18-99 0.00000001 1 CL0012 F 223 298 IJ  H-Bb S-Bb L-Bb 
Histone Domain P0C0S5_17-94 4.7e-18 1 CL0012 G 1016 1093 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_28-102 6.3e-22 1 CL0012 H 1428 1498 IJ  H-Bb S-Bb L-Bb L-Mn 
Histone_H2A_C Family P0C0S5_95-123 0.00000000015 1 No_clan C 894 918   
Histone_H2A_C Family P0C0S5_95-123 0.0000000000045 1 No_clan G 1094 1122   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2A C N/A N/A IJ  H-Bb S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2A G N/A N/A IJ  H-Bb S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2B D N/A N/A IJ  H-Bb S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2B H N/A N/A IJ  H-Bb S-Bb L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H3 A N/A N/A IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H3 E N/A N/A IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H4 B N/A N/A IJ  H-Bb S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H4 F N/A N/A IJ  H-Bb H-Mj S-Bb L-Bb 
GO terms
Protein chains: GO type: GO description:
A/E=1-136 C nucleosome
A/E=1-136 C nucleus
A/E=1-136 F DNA binding
A/E=1-136 P nucleosome assembly
B/F=1-103 C nucleoplasm
B/F=1-103 P negative regulation of megakaryocyte differentiation
Sequences
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1f66.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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