General information
PDB ID 1FFK
Title CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
PDB header RIBOSOME
Date 2000-07-25
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.4
Kind rna
Organism HALOARCULA MARISMORTUI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1ffk.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZ1 09 0
Biounits:
1ffk.pdb1.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZ1 09 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L6 Domain P14135_8-80 0.0000000000000058 1 No_clan 1 7 79   
Ribosomal_L6 Domain P14135_92-166 0.000000000000097 1 No_clan 1 91 165   
Ribosomal_L2_C Domain P20276_90-225 6.9e-46 1 CL0107 A 89 224   
Ribosomal_L2 Domain P20276_11-83 3.2e-17 1 CL0021 A 10 82   
Ribosomal_L5 Domain P14124_12-65 5e-16 1 CL0652 D 11 64   
Ribosomal_L5_C Domain P14124_69-166 0.000000038 1 No_clan D 68 152   
Ribosomal_L7Ae Domain P12743_15-108 3e-25 1 CL0101 E 14 108   
Ribosomal_L14 Domain P22450_12-132 4.8e-36 1 No_clan H 12 132   
Ribosomal_L22 Domain P10970_17-149 7.2e-25 1 No_clan O 16 148   
Ribosomal_L30 Domain P14121_2-52 0.000000000073 1 No_clan T 2 52   
Ribosomal_L3 Family P20279_2-338 3.1e-106 1 CL0575 B 1 337   
Ribosomal_L4 Family P12735_16-246 6.4e-41 1 No_clan C 16 246   
Ribosomal_L16 Family P60617_12-166 0.000000000000014 1 No_clan F 10 146   
Ribosomal_L13 Family P29198_10-114 0.0000068 1 No_clan G 10 114   
Ribosomal_L15e Family P60618_4-191 4e-81 1 CL0652 I 3 188   
Ribosomal_L27A Family P12737_25-143 2.6e-16 1 CL0588 J 24 142   
Ribosomal_L5e Family P14123_5-100 6e-17 1 CL0267 K 4 99   
Ribosomal_L5e Family P14123_92-133 0.00000023 1 CL0267 K 91 132   
Ribosomal_L18 Family 0.0000086 0 CL0588 L 1 115
Ribosomal_L19e Family P14119_3-144 5.3e-56 1 No_clan M 2 143   
Ribosomal_L21e Family P12734_2-96 6.6e-26 1 CL0107 N 2 94   
Ribosomal_L23 Family P12732_4-77 9.9e-16 1 No_clan P 3 76   
Ribosomal_L26 Family P10972_2-116 4.1e-23 1 No_clan Q 1 115   
KOW Family P10972_45-76 0.000000038 1 CL0107 Q 44 75   
Ribosomal_L24e Family P14116_5-57 5.1e-21 1 CL0175 R 4 56   
Ribosomal_L29 Family P10971_7-63 6.4e-20 1 CL0346 S 6 62   
Ribosomal_L31e Family P18138_8-85 0.0000000013 1 No_clan U 7 84   
Ribosomal_L32e Family P12736_126-231 1.8e-34 1 No_clan V 28 133   
Ribosomal_L37ae Family P60619_11-82 2.9e-28 1 CL0167 W 10 82   
Ribosomal_L37e Family P32410_3-56 1.9e-22 1 CL0167 X 2 55   
Ribosomal_L39 Family P22452_8-49 0.00000037 1 No_clan Y 7 49   
Ribosomal_L44 Family P32411_16-91 1.1e-25 1 CL0167 Z 16 91   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: Long alpha-hairpin
    Superfamily: Ribosomal protein L29 (L29p)
      Family: Ribosomal protein L29 (L29p)
Ribosomal protein L29 (L29p) S N/A N/A -
Class: All alpha proteins
  Fold: Ribosomal protein L19 (L19e)
    Superfamily: Ribosomal protein L19 (L19e)
      Family: Ribosomal protein L19 (L19e)
Ribosomal protein L19 (L19e) M N/A N/A -
Class: All alpha proteins
  Fold: Non-globular all-alpha subunits of globular proteins
    Superfamily: Ribosomal protein L39e
      Family: Ribosomal protein L39e
Ribosomal protein L39e Y N/A N/A -
Class: All beta proteins
  Fold: SH3-like barrel
    Superfamily: Translation proteins SH3-like domain
      Family: Ribosomal proteins L24p and L21e
Ribosomal proteins L24 (L24p) Q N/A N/A -
Class: All beta proteins
  Fold: SH3-like barrel
    Superfamily: Translation proteins SH3-like domain
      Family: Ribosomal proteins L24p and L21e
Ribosomal proteins L21e N N/A N/A -
Class: All beta proteins
  Fold: SH3-like barrel
    Superfamily: Translation proteins SH3-like domain
      Family: C-terminal domain of ribosomal protein L2
C-terminal domain of ribosomal protein L2 A 91 237 -
Class: All beta proteins
  Fold: Ribosomal protein L14
    Superfamily: Ribosomal protein L14
      Family: Ribosomal protein L14
Ribosomal protein L14 H N/A N/A -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Cold shock DNA-binding domain-like
N-terminal domain of ribosomal protein L2 A 1 90 -
Class: All beta proteins
  Fold: Reductase/isomerase/elongation factor common domain
    Superfamily: Translation proteins
      Family: Ribosomal protein L3
Ribosomal protein L3 B N/A N/A -
Class: Alpha and beta proteins (a/b)
  Fold: Barstar-like
    Superfamily: Ribosomal protein L32e
      Family: Ribosomal protein L32e
Ribosomal protein L32e V N/A N/A -
Class: Alpha and beta proteins (a/b)
  Fold: Ribosomal proteins L15p and L18e
    Superfamily: Ribosomal proteins L15p and L18e
      Family: Ribosomal proteins L15p and L18e
Ribosomal protein L15 (L15p) J N/A N/A -
Class: Alpha and beta proteins (a/b)
  Fold: Ribosomal proteins L15p and L18e
    Superfamily: Ribosomal proteins L15p and L18e
      Family: Ribosomal proteins L15p and L18e
Ribosomal protein L18e L N/A N/A -
Class: Alpha and beta proteins (a/b)
  Fold: Ribosomal protein L13
    Superfamily: Ribosomal protein L13
      Family: Ribosomal protein L13
Ribosomal protein L13 G N/A N/A -
Class: Alpha and beta proteins (a/b)
  Fold: Ribosomal protein L4
    Superfamily: Ribosomal protein L4
      Family: Ribosomal protein L4
Ribosomal protein L4 C N/A N/A -
Class: Alpha and beta proteins (a/b)
  Fold: Ribonuclease H-like motif
    Superfamily: Translational machinery components
      Family: Ribosomal protein L18 and S11
Ribosomal protein L18 (L18p) K N/A N/A -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal proteins S24e, L23 and L15e
    Superfamily: Ribosomal proteins S24e, L23 and L15e
      Family: L23p
Ribosomal protein L23 P N/A N/A -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal proteins S24e, L23 and L15e
    Superfamily: Ribosomal proteins S24e, L23 and L15e
      Family: L15e
Ribosomal protein L15e I N/A N/A -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal protein L31e
    Superfamily: Ribosomal protein L31e
      Family: Ribosomal protein L31e
Ribosomal protein L31e U N/A N/A -
Class: Alpha and beta proteins (a+b)
  Fold: alpha/beta-Hammerhead
    Superfamily: Ribosomal protein L16p/L10e
      Family: Ribosomal protein L10e
Ribosomal protein L10e F N/A N/A -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal protein L22
    Superfamily: Ribosomal protein L22
      Family: Ribosomal protein L22
Ribosomal protein L22 O N/A N/A -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal protein L30p/L7e
    Superfamily: Ribosomal protein L30p/L7e
      Family: Ribosomal protein L30p/L7e
Archaeal L30 (L30a) T N/A N/A -
Class: Alpha and beta proteins (a+b)
  Fold: RL5-like
    Superfamily: RL5-like
      Family: Ribosomal protein L5
Ribosomal protein L5 D N/A N/A -
Class: Alpha and beta proteins (a+b)
  Fold: Bacillus chorismate mutase-like
    Superfamily: L30e-like
      Family: L30e/L7ae ribosomal proteins
Ribosomal protein L7ae E N/A N/A -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal protein L6
    Superfamily: Ribosomal protein L6
      Family: Ribosomal protein L6
Ribosomal protein L6 1 1 79 -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal protein L6
    Superfamily: Ribosomal protein L6
      Family: Ribosomal protein L6
Ribosomal protein L6 1 80 172 -
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: Ribosomal protein L24e
Ribosomal protein L24e R N/A N/A -
Class: Small proteins
  Fold: Rubredoxin-like
    Superfamily: Zn-binding ribosomal proteins
      Family: Ribosomal protein L37ae
Ribosomal protein L37ae W N/A N/A -
Class: Small proteins
  Fold: Rubredoxin-like
    Superfamily: Zn-binding ribosomal proteins
      Family: Ribosomal protein L37e
Ribosomal protein L37e X N/A N/A -
Class: Small proteins
  Fold: Rubredoxin-like
    Superfamily: Zn-binding ribosomal proteins
      Family: Ribosomal protein L44e
Ribosomal protein L44e Z N/A N/A -
GO terms
Protein chains: GO type: GO description:
E=2-120 F RNA binding
E=2-120 P ribosome biogenesis
K=2-187 C ribosome
K=2-187 F 5S rRNA binding
K=2-187 F structural constituent of ribosome
K=2-187 P translation
T=1-154 C large ribosomal subunit
V=99-241 F DNA binding
V=99-241 F nucleotide binding
V=99-241 F rRNA binding
V=99-241 P DNA repair
Z=1-92 F metal ion binding
Z=1-92 F tRNA binding
Sequences
Download file with secondary structure created by Stride  
1ffk.pdb1.pdb:   [ download sequences in FASTA format ]
1 (protein): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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0 (rna): 
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9 (rna): 
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