General information
PDB ID 1FJG
Title STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN
PDB header RIBOSOME
Date 2000-08-08
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind rna
Organism THERMUS THERMOPHILUS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1fjg.pdb BCDEFGHIJKLMNOPQRSTV AX 0
Biounits:
1fjg.pdb1.pdb BCDEFGHIJKLMNOPQRSTV AX 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S3_C Domain P80372_120-202 1.5e-33 1 No_clan C 120 202 A   
KH_2 Domain P80372_38-111 2.1e-18 1 CL0007 C 38 111   
S4 Domain P80373_99-146 1.8e-23 1 CL0492 D 99 146 A   
Ribosomal_S5_C Domain Q5SHQ5_81-152 2e-28 1 CL0329 E 81 152 A   
Ribosomal_S5 Domain Q5SHQ5_6-70 2.6e-23 1 CL0196 E 6 70 A   
Ribosomal_S6 Domain Q5SLP8_3-92 4.7e-21 1 No_clan F 3 92 A   
Ribosomal_S7 Domain P17291_2-149 8.1e-63 1 No_clan G 2 149 A   
Ribosomal_S8 Domain A0A0M9AFS9_4-138 1.4e-49 1 No_clan H 4 138 A   
Ribosomal_S15 Domain Q5SJ76_8-88 5.1e-39 1 CL0600 O 8 88 A   
Ribosomal_S17 Domain A0A0N0BLS5_8-75 1.7e-32 1 CL0021 Q 8 75 A   
Ribosomal_S19 Domain Q5SHP2_3-83 2.6e-37 1 No_clan S 3 83 A   
Ribosomal_S2 Family P80371_10-225 3.7e-91 1 CL0067 B 10 225 A   
Ribosomal_S4 Family P80373_3-98 3.4e-32 1 CL0492 D 3 98 A   
Ribosomal_S9 Family P80374_8-128 4.9e-44 1 CL0329 I 8 128 A   
Ribosomal_S10 Family Q5SHN7_5-99 7.5e-34 1 No_clan J 5 99 A   
Ribosomal_S11 Family P80376_17-126 1.7e-42 1 CL0267 K 17 126 A   
Ribosom_S12_S23 Family Q5SHN3_12-123 2.5e-43 1 CL0021 L 15 126 A   
Ribosomal_S13 Family P80377_3-109 8.9e-33 1 CL0303 M 3 109 A   
Ribosomal_S14 Family A0A0N0BLP2_9-60 2.2e-23 1 No_clan N 9 60 A   
Ribosomal_S16 Family Q5SJH3_8-67 2.1e-26 1 No_clan P 8 67 A   
Ribosomal_S18 Family Q5SLQ0_30-79 1.9e-22 1 No_clan R 30 79 A   
Ribosomal_S20p Family P80380_8-89 1.4e-20 1 No_clan T 8 89 A   
LUC7 Family 0.00058 0 No_clan T 9 103 A
Thx Family Q5SIH3_2-25 0.0000000000000022 1 No_clan V 2 25 A   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Ribosomal protein S18
      Family: Ribosomal protein S18
Ribosomal protein S18 R N/A N/A A -
Class: All alpha proteins
  Fold: S13-like H2TH domain
    Superfamily: S13-like H2TH domain
      Family: Ribosomal protein S13
Ribosomal protein S13 M N/A N/A A -
Class: All alpha proteins
  Fold: Spectrin repeat-like
    Superfamily: Ribosomal protein S20
      Family: Ribosomal protein S20
Ribosomal protein S20 T N/A N/A A -
Class: All alpha proteins
  Fold: S15/NS1 RNA-binding domain
    Superfamily: S15/NS1 RNA-binding domain
      Family: Ribosomal protein S15
Ribosomal protein S15 O N/A N/A A -
Class: All alpha proteins
  Fold: Ribosomal protein S7
    Superfamily: Ribosomal protein S7
      Family: Ribosomal protein S7
Ribosomal protein S7 G N/A N/A A -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Cold shock DNA-binding domain-like
Ribosomal protein S12 L N/A N/A A -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Cold shock DNA-binding domain-like
Ribosomal protein S17 Q N/A N/A A -
Class: Alpha and beta proteins (a/b)
  Fold: Flavodoxin-like
    Superfamily: Ribosomal protein S2
      Family: Ribosomal protein S2
Ribosomal protein S2 B N/A N/A A -
Class: Alpha and beta proteins (a/b)
  Fold: Ribonuclease H-like motif
    Superfamily: Translational machinery components
      Family: Ribosomal protein L18 and S11
Ribosomal protein S11 K N/A N/A A -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal protein S5 domain 2-like
    Superfamily: Ribosomal protein S5 domain 2-like
      Family: Translational machinery components
Ribosomal protein S5, C-terminal domain E 74 154 A -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal protein S5 domain 2-like
    Superfamily: Ribosomal protein S5 domain 2-like
      Family: Translational machinery components
Ribosomal protein S9 I N/A N/A A -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal protein S16
    Superfamily: Ribosomal protein S16
      Family: Ribosomal protein S16
Ribosomal protein S16 P N/A N/A A -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal protein S19
    Superfamily: Ribosomal protein S19
      Family: Ribosomal protein S19
Ribosomal protein S19 S N/A N/A A -
Class: Alpha and beta proteins (a+b)
  Fold: dsRBD-like
    Superfamily: dsRNA-binding domain-like
      Family: Ribosomal S5 protein, N-terminal domain
Ribosomal S5 protein, N-terminal domain E 5 73 A -
Class: Alpha and beta proteins (a+b)
  Fold: Alpha-lytic protease prodomain-like
    Superfamily: Prokaryotic type KH domain (KH-domain type II)
      Family: Prokaryotic type KH domain (KH-domain type II)
Ribosomal protein S3 N-terminal domain C 2 106 A -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal protein S3 C-terminal domain
    Superfamily: Ribosomal protein S3 C-terminal domain
      Family: Ribosomal protein S3 C-terminal domain
Ribosomal protein S3 C-terminal domain C 107 207 A -
Class: Alpha and beta proteins (a+b)
  Fold: Ferredoxin-like
    Superfamily: Ribosomal protein S6
      Family: Ribosomal protein S6
Ribosomal protein S6 F N/A N/A A -
Class: Alpha and beta proteins (a+b)
  Fold: Ferredoxin-like
    Superfamily: Ribosomal protein S10
      Family: Ribosomal protein S10
Ribosomal protein S10 J N/A N/A A -
Class: Alpha and beta proteins (a+b)
  Fold: Alpha-L RNA-binding motif
    Superfamily: Alpha-L RNA-binding motif
      Family: Ribosomal protein S4
Ribosomal protein S4 D N/A N/A A -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal protein S8
    Superfamily: Ribosomal protein S8
      Family: Ribosomal protein S8
Ribosomal protein S8 H N/A N/A A -
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: Ribosomal protein S14
Ribosomal protein S14 N N/A N/A A -
Class: Peptides
  Fold: Arg-rich RNA binding peptides
    Superfamily: 30S ribosomal protein THX
      Family: 30S ribosomal protein THX
30S ribosomal protein THX V N/A N/A A -
GO terms
Protein chains: GO type: GO description:
C=1-239 C small ribosomal subunit
C=1-239 F rRNA binding
C=1-239 F structural constituent of ribosome
C=1-239 P translation
D=1-209 F metal ion binding
J=1-105 C ribosome
L=2-132 F tRNA binding
Sequences
Download file with secondary structure created by Stride  
1fjg.pdb1.pdb:   [ download sequences in FASTA format ]
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
I (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
K (protein): 
Click "SHOW" for view sequence
L (protein): 
Click "SHOW" for view sequence
M (protein): 
Click "SHOW" for view sequence
N (protein): 
Click "SHOW" for view sequence
O (protein): 
Click "SHOW" for view sequence
P (protein): 
Click "SHOW" for view sequence
Q (protein): 
Click "SHOW" for view sequence
R (protein): 
Click "SHOW" for view sequence
S (protein): 
Click "SHOW" for view sequence
T (protein): 
Click "SHOW" for view sequence
V (protein): 
Click "SHOW" for view sequence
A (rna): 
Click "SHOW" for view sequence
X (rna): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text