General information
PDB ID 1GD2
Title CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA
PDB header TRANSCRIPTION/DNA
Date 2000-08-25
Experimental method X-RAY DIFFRACTION
Resolution (A) 2
Kind dna
Organism SCHIZOSACCHAROMYCES POMBE
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1gd2.pdb EFGHIJ ABCD 0
Biounits:
1gd2.pdb1.pdb EF AB 1
1gd2.pdb2.pdb GH CD 1
1gd2.pdb3.pdb IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
bZIP_1 Family Q01663_79-140 3.4e-09 1 CL0018 E 79 137 AB   
bZIP_1 Family Q01663_79-140 2.9e-09 1 CL0018 F 79 140 AB   
bZIP_1 Family Q01663_79-140 3.2e-09 1 CL0018 G 79 137 CD   
bZIP_1 Family Q01663_79-140 3.2e-09 1 CL0018 H 79 137 CD   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Coiled coil proteins
  Fold: Parallel coiled-coil
    Superfamily: Leucine zipper domain
      Family: Leucine zipper domain
PAP1 E N/A N/A AB  H-Bb H-Mj 
Class: Coiled coil proteins
  Fold: Parallel coiled-coil
    Superfamily: Leucine zipper domain
      Family: Leucine zipper domain
PAP1 F N/A N/A AB  H-Bb H-Mj 
Class: Coiled coil proteins
  Fold: Parallel coiled-coil
    Superfamily: Leucine zipper domain
      Family: Leucine zipper domain
PAP1 G N/A N/A CD  H-Bb H-Mj 
Class: Coiled coil proteins
  Fold: Parallel coiled-coil
    Superfamily: Leucine zipper domain
      Family: Leucine zipper domain
PAP1 H N/A N/A CD  H-Bb H-Mj 
Class: Coiled coil proteins
  Fold: Parallel coiled-coil
    Superfamily: Leucine zipper domain
      Family: Leucine zipper domain
PAP1 I N/A N/A -
Class: Coiled coil proteins
  Fold: Parallel coiled-coil
    Superfamily: Leucine zipper domain
      Family: Leucine zipper domain
PAP1 J N/A N/A -
GO terms
Protein chains: GO type: GO description:
E/F/G/H/I/J=71-140 C cytosol
E/F/G/H/I/J=71-140 C NuA4 histone acetyltransferase complex
E/F/G/H/I/J=71-140 F RNA polymerase II core promoter proximal region sequence-specific DNA binding
E/F/G/H/I/J=71-140 F sequence-specific DNA binding RNA polymerase II transcription factor activity
E/F/G/H/I/J=71-140 P cellular response to hydrogen peroxide
E/F/G/H/I/J=71-140 P cellular response to caffeine
E/F/G/H/I/J=71-140 P response to methylglyoxal
E/F/G/H/I/J=71-140 P cellular response to nitrogen starvation
E/F/G/H/I/J=71-140 P histone acetylation
Sequences
Download file with secondary structure created by Stride  
1gd2.pdb1.pdb:   [ download sequences in FASTA format ]
A (dna): 
Click "SHOW" for view sequence
B (dna): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
1gd2.pdb2.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
1gd2.pdb3.pdb:   [ download sequences in FASTA format ]
I (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2020

text