General information
PDB ID 1GDT
Title CRYSTAL STRUCTURE OF A SITE-SPECIFIC RECOMBINASE, GAMMA- DELTA RESOLVASE COMPLEXED WITH A 34 BP CLEAVAGE SITE
PDB header DNA BINDING PROTEIN/DNA
Date 1995-04-11
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1gdt.pdb AB CDEF 0
Biounits:
1gdt.pdb1.pdb AB CDEF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Resolvase Domain P03012_3-139 1.6e-40 1 No_clan A 3 139 EC  H-Mn 
HTH_7 Domain P03012_141-182 9.8e-09 1 CL0123 A 141 182 CF  H-Bb H-Mj L-Bb L-Mj L-Mn 
Resolvase Domain P03012_3-139 1.6e-40 1 No_clan B 3 139 CE  H-Bb L-Bb 
HTH_7 Domain P03012_141-182 9.8e-09 1 CL0123 B 141 182 DE  H-Bb H-Mj L-Bb L-Mj L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Recombinase DNA-binding domain
gamma,delta resolvase (C-terminal domain) A 141 183 CF  H-Bb H-Mj L-Bb L-Mj L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Recombinase DNA-binding domain
gamma,delta resolvase (C-terminal domain) B 141 183 DE  H-Bb H-Mj L-Bb L-Mj L-Mn 
Class: Alpha and beta proteins (a/b)
  Fold: Resolvase-like
    Superfamily: Resolvase-like
      Family: gamma,delta resolvase, catalytic domain
gamma,delta resolvase, catalytic domain A 1 140 EC -
Class: Alpha and beta proteins (a/b)
  Fold: Resolvase-like
    Superfamily: Resolvase-like
      Family: gamma,delta resolvase, catalytic domain
gamma,delta resolvase, catalytic domain B 1 140 CE -
GO terms
Protein chains: GO type: GO description:
A/B=1-183 F DNA binding
A/B=1-183 F recombinase activity
A/B=1-183 P DNA integration
Sequences
Download file with secondary structure created by Stride  
1gdt.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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E (dna): 
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F (dna): 
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A (protein): 
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B (protein): 
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