General information
PDB ID 1GJI
Title CRYSTAL STRUCTURE OF C-REL BOUND TO DNA
PDB header TRANSCRIPTION/DNA
Date 2001-05-30
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.85
Kind dna
Organism GALLUS GALLUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1gji.pdb AB CD 0
Biounits:
1gji.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RHD_DNA_bind Domain P16236_9-177 4.8e-77 1 CL0073 A 9 177 CD  H-Bb L-Bb L-Mj 
RHD_dimer Domain P16236_186-281 4.9e-37 1 CL0159 A 186 281 CD  S-Bb L-Bb 
RHD_DNA_bind Domain P16236_9-177 4.8e-77 1 CL0073 B 9 177 CD  H-Bb H-Mj S-Mj L-Bb L-Mj 
RHD_dimer Domain P16236_186-281 4.9e-37 1 CL0159 B 186 281 CD  L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: E set domains
      Family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
p65 subunit of NF-kappa B (NFKB), dimerization domain A 182 281 CD -
Class: All beta proteins
  Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
    Superfamily: p53-like transcription factors
      Family: Rel/Dorsal transcription factors, DNA-binding domain
p65 subunit of NF-kappa B (NFKB), N-terminal domain A 7 181 CD -
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: E set domains
      Family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
p65 subunit of NF-kappa B (NFKB), dimerization domain B 182 281 CD -
Class: All beta proteins
  Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
    Superfamily: p53-like transcription factors
      Family: Rel/Dorsal transcription factors, DNA-binding domain
p65 subunit of NF-kappa B (NFKB), N-terminal domain B 7 181 CD -
GO terms
Protein chains: GO type: GO description:
A/B=7-281 C nucleus
A/B=7-281 C cytoplasm
A/B=7-281 F sequence-specific DNA binding transcription factor activity
A/B=7-281 F DNA binding
A/B=7-281 P apoptotic DNA fragmentation
Sequences
Download file with secondary structure created by Stride  
1gji.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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