General information
PDB ID 1H88
Title CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1
PDB header TRANSCRIPTION/DNA
Date 2001-01-29
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind dna
Organism HOMO SAPIENS, MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1h88.pdb ABC DE 0
Biounits:
1h88.pdb1.pdb ABC DE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Taxilin Coiled-coil 0.001 0 No_clan B 272 336 DE
Myb_DNA-binding Domain P06876_92-138 1.1e-19 1 CL0123 C 92 138 DE  H-Bb H-Mj L-Bb 
Myb_DNA-binding Domain P06876_40-86 4.1e-19 1 CL0123 C 40 86   
Myb_DNA-binding Domain P06876_144-189 1e-17 1 CL0123 C 144 189 DE  H-Bb H-Mj L-Bb 
bZIP_2 Family P17676_270-323 1.4e-19 1 CL0018 A 270 323 DE  H-Bb H-Mj 
bZIP_2 Family P17676_270-323 1.4e-19 1 CL0018 B 270 323 DE  H-Bb H-Mj 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Coiled coil proteins
  Fold: Parallel coiled-coil
    Superfamily: Leucine zipper domain
      Family: Leucine zipper domain
C/ebp beta A N/A N/A DE  H-Bb H-Mj L-Bb 
Class: Coiled coil proteins
  Fold: Parallel coiled-coil
    Superfamily: Leucine zipper domain
      Family: Leucine zipper domain
C/ebp beta B N/A N/A DE  H-Bb H-Mj 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Myb/SANT domain
c-Myb, DNA-binding domain C 39 88 -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Myb/SANT domain
c-Myb, DNA-binding domain C 89 143 DE  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Myb/SANT domain
c-Myb, DNA-binding domain C 144 190 DE  H-Bb H-Mj L-Bb 
GO terms
Protein chains: GO type: GO description:
A/B=259-336 C cytoplasm
A/B=259-336 C nuclear chromatin
A/B=259-336 C nuclear matrix
A/B=259-336 C nucleus
A/B=259-336 F RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
A/B=259-336 F RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
A/B=259-336 F sequence-specific DNA binding
A/B=259-336 P mammary gland epithelial cell differentiation
A/B=259-336 P cellular response to amino acid stimulus
A/B=259-336 P mammary gland epithelial cell proliferation
A/B=259-336 P anti-apoptosis
A/B=259-336 P response to lipopolysaccharide
A/B=259-336 P positive regulation of osteoblast differentiation
A/B=259-336 P embryonic placenta development
A/B=259-336 P brown fat cell differentiation
A/B=259-336 P induction of apoptosis
A/B=259-336 P negative regulation of transcription, DNA-dependent
A/B=259-336 P acute-phase response
A/B=259-336 P neuron differentiation
A/B=259-336 P immune response
A/B=259-336 P regulation of interleukin-6 biosynthetic process
C=37-193 C nucleoplasm
C=37-193 F sequence-specific DNA binding transcription factor activity
C=37-193 F DNA binding
C=37-193 P thymus development
C=37-193 P embryonic digestive tract development
C=37-193 P in utero embryonic development
C=37-193 P transcription, DNA-dependent
C=37-193 P calcium ion transport
C=37-193 P B cell differentiation
C=37-193 P G1/S transition of mitotic cell cycle
C=37-193 P positive regulation of transcription from RNA polymerase II promoter
C=37-193 P homeostasis of number of cells
Sequences
Download file with secondary structure created by Stride  
1h88.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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