General information
PDB ID 1I8M
Title CRYSTAL STRUCTURE OF A RECOMBINANT ANTI-SINGLE-STRANDED DNA ANTIBODY FRAGMENT COMPLEXED WITH DT5
PDB header IMMUNE SYSTEM/DNA
Date 2001-03-14
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.1
Kind dna
Organism MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1i8m.pdb LHAB TD 0
Biounits:
1i8m.pdb1.pdb LH T 1
1i8m.pdb2.pdb AB D 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
C1-set Domain Q7TS98_137-223 5.1e-26 1 CL0011 A 115 201   
V-set Domain Q7TS98_28-129 6.8e-19 1 CL0011 A 6 107 D   
V-set Domain Q924Q6_6-119 2.4e-17 1 CL0011 B 6 112 D   
C1-set Domain 0.0000000000000085 1 CL0011 B 114 202
V-set Domain Q924Q6_6-119 2.4e-17 1 CL0011 H 6 112 T   
C1-set Domain 0.0000000000000085 1 CL0011 H 114 202
C1-set Domain Q7TS98_137-223 5.1e-26 1 CL0011 L 115 201   
V-set Domain Q7TS98_28-129 6.8e-19 1 CL0011 L 6 107 T   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: Immunoglobulin
      Family: V set domains (antibody variable domain-like)
Immunoglobulin light chain kappa variable domain, VL-kappa A 1 107 D -
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: Immunoglobulin
      Family: C1 set domains (antibody constant domain-like)
Immunoglobulin light chain kappa constant domain, CL-kappa A 108 213 -
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: Immunoglobulin
      Family: V set domains (antibody variable domain-like)
Immunoglobulin heavy chain variable domain, VH B 1 113 D -
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: Immunoglobulin
      Family: C1 set domains (antibody constant domain-like)
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma B 114 213 -
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: Immunoglobulin
      Family: V set domains (antibody variable domain-like)
Immunoglobulin heavy chain variable domain, VH H 1 113 T -
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: Immunoglobulin
      Family: C1 set domains (antibody constant domain-like)
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma H 114 213 -
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: Immunoglobulin
      Family: V set domains (antibody variable domain-like)
Immunoglobulin light chain kappa variable domain, VL-kappa L 1 107 T -
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: Immunoglobulin
      Family: C1 set domains (antibody constant domain-like)
Immunoglobulin light chain kappa constant domain, CL-kappa L 108 213 -
GO terms
Protein chains: GO type: GO description:
A/L=1-106 C plasma membrane
A/L=1-106 F antigen binding
Sequences
Download file with secondary structure created by Stride  
1i8m.pdb1.pdb:   [ download sequences in FASTA format ]
T (dna): 
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H (protein): 
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L (protein): 
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1i8m.pdb2.pdb:   [ download sequences in FASTA format ]
D (dna): 
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A (protein): 
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B (protein): 
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