General information
PDB ID 1IBL
Title STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN
PDB header RIBOSOME
Date 2001-03-28
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.11
Kind rna
Organism THERMUS THERMOPHILUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1ibl.pdb BCDEFGHIJKLMNOPQRSTV AXYZ 0
Biounits:
1ibl.pdb1.pdb BCDEFGHIJKLMNOPQRSTV AXYZ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S3_C Domain P80372_120-202 1.5e-33 1 No_clan C 120 202 A   
KH_2 Domain P80372_38-111 2.1e-18 1 CL0007 C 38 111   
S4 Domain P80373_99-146 1.8e-23 1 CL0492 D 99 146 A   
Ribosomal_S5_C Domain Q5SHQ5_81-152 2e-28 1 CL0329 E 81 152 A   
Ribosomal_S5 Domain Q5SHQ5_6-70 2.6e-23 1 CL0196 E 6 70 A   
Ribosomal_S6 Domain Q5SLP8_3-92 4.7e-21 1 No_clan F 3 92 A   
Ribosomal_S7 Domain P17291_2-149 8.1e-63 1 No_clan G 2 149 A   
Ribosomal_S8 Domain A0A0M9AFS9_4-138 1.4e-49 1 No_clan H 4 138 A   
Ribosomal_S15 Domain Q5SJ76_8-88 5.1e-39 1 CL0600 O 8 88 A   
Ribosomal_S17 Domain A0A0N0BLS5_8-75 1.7e-32 1 CL0021 Q 8 75 A   
Ribosomal_S19 Domain Q5SHP2_3-83 2.6e-37 1 No_clan S 3 83 A   
Ribosomal_S2 Family P80371_10-225 3.6e-91 1 CL0067 B 10 225 A   
Ribosomal_S4 Family P80373_3-98 3.4e-32 1 CL0492 D 3 98 A   
Ribosomal_S9 Family P80374_8-128 4.9e-44 1 CL0329 I 8 128 A   
Ribosomal_S10 Family Q5SHN7_5-99 7.5e-34 1 No_clan J 5 99 A   
Ribosomal_S11 Family P80376_17-126 1.7e-42 1 CL0267 K 17 126 A   
Ribosom_S12_S23 Family Q5SHN3_12-123 2.4e-43 1 CL0021 L 15 126 A   
Ribosomal_S13 Family P80377_3-109 7.2e-33 1 CL0303 M 3 109 A   
Ribosomal_S14 Family A0A0N0BLP2_9-60 2.2e-23 1 No_clan N 9 60 A   
Ribosomal_S16 Family Q5SJH3_8-67 2.1e-26 1 No_clan P 8 67 A   
Ribosomal_S18 Family Q5SLQ0_30-79 1.9e-22 1 No_clan R 30 79 A   
Ribosomal_S20p Family P80380_8-89 1.5e-20 1 No_clan T 8 89 A   
LUC7 Family 0.00076 0 No_clan T 9 103 A
Thx Family Q5SIH3_2-25 0.0000000000000022 1 No_clan V 2 25 A   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex B N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex C N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex D N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex E N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex F N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex G N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex H N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex I N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex J N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex K N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex L N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex M N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex N N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex O N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex P N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex Q N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex R N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex S N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex T N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex V N/A N/A A -
GO terms
Protein chains: GO type: GO description:
C=1-239 C small ribosomal subunit
C=1-239 F rRNA binding
C=1-239 F structural constituent of ribosome
C=1-239 P translation
D=1-209 F metal ion binding
J=1-105 C ribosome
L=2-132 F tRNA binding
Sequences
Download file with secondary structure created by Stride  
1ibl.pdb1.pdb:   [ download sequences in FASTA format ]
B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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V (protein): 
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A (rna): 
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X (rna): 
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Y (rna): 
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Z (rna): 
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