General information
PDB ID 1IG4
Title SOLUTION STRUCTURE OF THE METHYL-CPG-BINDING DOMAIN OF HUMAN MBD1 IN COMPLEX WITH METHYLATED DNA
PDB header TRANSCRIPTION/DNA
Date 2001-04-17
Experimental method SOLUTION NMR
Resolution (A) N/A
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1ig4.pdb A BC 20
NMR models:
1ig4.MDL1.pdb A BC 1
1ig4.MDL2.pdb A BC 1
1ig4.MDL3.pdb A BC 1
1ig4.MDL4.pdb A BC 1
1ig4.MDL5.pdb A BC 1
1ig4.MDL6.pdb A BC 1
1ig4.MDL7.pdb A BC 1
1ig4.MDL8.pdb A BC 1
1ig4.MDL9.pdb A BC 1
1ig4.MDL10.pdb A BC 1
1ig4.MDL11.pdb A BC 1
1ig4.MDL12.pdb A BC 1
1ig4.MDL13.pdb A BC 1
1ig4.MDL14.pdb A BC 1
1ig4.MDL15.pdb A BC 1
1ig4.MDL16.pdb A BC 1
1ig4.MDL17.pdb A BC 1
1ig4.MDL18.pdb A BC 1
1ig4.MDL19.pdb A BC 1
1ig4.MDL20.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
MBD Domain Q9UIS9_1-75 4.9e-18 1 CL0081 A 1 71 BC  H-Bb S-Bb L-Bb L-Mj 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: DNA-binding domain
    Superfamily: DNA-binding domain
      Family: Methyl-CpG-binding domain, MBD
Methylation-dependent transcriptional repressor MBD1/PCM1 A N/A N/A BC -
GO terms
Protein chains: GO type: GO description:
A=1-75 C chromosome
A=1-75 C host cell nucleus
A=1-75 C nuclear matrix
A=1-75 C nuclear speck
A=1-75 C nucleoplasm
A=1-75 C nucleus
A=1-75 F DNA binding
A=1-75 F double-stranded methylated DNA binding
A=1-75 F methyl-CpG binding
A=1-75 F unmethylated CpG binding
A=1-75 F zinc ion binding
A=1-75 P negative regulation of transcription, DNA-templated
A=1-75 P transcription by RNA polymerase II
Sequences
Download file with secondary structure created by Stride  
1ig4.MDL1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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