General information
PDB ID 1IL2
Title CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE:YEAST TRNAASP:ASPARTYL-ADENYLATE COMPLEX
PDB header LIGASE/RNA
Date 2001-05-07
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.6
Kind rna
Organism SACCHAROMYCES CEREVISIAE, ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1il2.pdb AB CD 0
Biounits:
1il2.pdb1.pdb A C 1
1il2.pdb2.pdb B D 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
tRNA-synt_2 Domain P21889_117-558 7.8e-107 1 CL0040 A 117 558 C   
GAD Domain P21889_307-406 6.3e-32 1 CL0250 A 307 406   
tRNA_anti-codon Domain P21889_18-102 5.7e-17 1 CL0021 A 18 102 C   
tRNA-synt_2 Domain P21889_117-558 7.8e-107 1 CL0040 B 1117 1558 D   
GAD Domain P21889_307-406 6.3e-32 1 CL0250 B 1307 1406   
tRNA_anti-codon Domain P21889_18-102 5.7e-17 1 CL0021 B 1018 1102 D   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Anticodon-binding domain
Aspartyl-tRNA synthetase (AspRS) A 1 106 C -
Class: Alpha and beta proteins (a+b)
  Fold: DCoH-like
    Superfamily: GAD domain-like
      Family: GAD domain
Prokaryotic AspRS, insert domain A 288 420 -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) A 107 287 C -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) A 421 585 C -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) A 107 287 C -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) A 421 585 C -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Anticodon-binding domain
Aspartyl-tRNA synthetase (AspRS) B 1001 1106 D -
Class: Alpha and beta proteins (a+b)
  Fold: DCoH-like
    Superfamily: GAD domain-like
      Family: GAD domain
Prokaryotic AspRS, insert domain B 1288 1420 -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) B 1107 1287 D -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) B 1421 1585 D -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) B 1107 1287 D -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Aspartyl-tRNA synthetase (AspRS) B 1421 1585 D -
GO terms
Protein chains: GO type: GO description:
A/B=1-590 C cytosol
A/B=1-590 F aspartate-tRNA ligase activity
A/B=1-590 F ATP binding
A/B=1-590 F nucleic acid binding
A/B=1-590 P aspartyl-tRNA aminoacylation
Sequences
Download file with secondary structure created by Stride  
1il2.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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C (rna): 
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1il2.pdb2.pdb:   [ download sequences in FASTA format ]
B (protein): 
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D (rna): 
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