General information
PDB ID 1J2B
Title CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE COMPLEXED WITH LAMBDA-FORM TRNA(VAL)
PDB header TRANSFERASE/RNA
Date 2002-12-29
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.3
Kind rna
Organism PYROCOCCUS HORIKOSHII
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1j2b.pdb AB CD 0
Biounits:
1j2b.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TGT_C1 Domain O58843_361-430 2.2e-33 1 No_clan A 361 430 C   
TGT_C2 Domain O58843_438-506 1.3e-24 1 No_clan A 438 506 C   
TGT_C1 Domain O58843_361-430 2.2e-33 1 No_clan B 361 430 D   
TGT_C2 Domain O58843_438-506 1.3e-24 1 No_clan B 438 506 D   
TGT Family O58843_16-341 1.5e-41 1 No_clan A 113 335 D   
PUA Family O58843_508-581 0.000000000000011 1 CL0178 A 508 581 C   
TGT Family O58843_16-341 1.5e-41 1 No_clan B 113 335 C   
PUA Family O58843_508-581 0.000000000000011 1 CL0178 B 508 581 D   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: PUA domain-like
    Superfamily: PUA domain-like
      Family: PUA domain
Archaeosine tRNA-guanine transglycosylase, C3 domain A 506 582 C -
Class: Alpha and beta proteins (a/b)
  Fold: TIM beta/alpha-barrel
    Superfamily: tRNA-guanine transglycosylase
      Family: tRNA-guanine transglycosylase
Archaeosine tRNA-guanine transglycosylase, N-terminal domain A 7 360 D -
Class: Alpha and beta proteins (a+b)
  Fold: Cystatin-like
    Superfamily: Pre-PUA domain
      Family: Archaeosine tRNA-guanine transglycosylase, C2 domain
Archaeosine tRNA-guanine transglycosylase, C2 domain A 361 505 C -
Class: All beta proteins
  Fold: PUA domain-like
    Superfamily: PUA domain-like
      Family: PUA domain
Archaeosine tRNA-guanine transglycosylase, C3 domain B 506 582 D -
Class: Alpha and beta proteins (a/b)
  Fold: TIM beta/alpha-barrel
    Superfamily: tRNA-guanine transglycosylase
      Family: tRNA-guanine transglycosylase
Archaeosine tRNA-guanine transglycosylase, N-terminal domain B 7 360 C -
Class: Alpha and beta proteins (a+b)
  Fold: Cystatin-like
    Superfamily: Pre-PUA domain
      Family: Archaeosine tRNA-guanine transglycosylase, C2 domain
Archaeosine tRNA-guanine transglycosylase, C2 domain B 361 505 D -
GO terms
Protein chains: GO type: GO description:
A/B=1-582 F queuine tRNA-ribosyltransferase activity
A/B=1-582 F zinc ion binding
A/B=1-582 F RNA binding
A/B=1-582 P queuosine biosynthetic process
Sequences
Download file with secondary structure created by Stride  
1j2b.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (rna): 
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D (rna): 
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