General information
PDB ID 1J5N
Title SOLUTION STRUCTURE OF THE NON-SEQUENCE-SPECIFIC HMGB PROTEIN NHP6A IN COMPLEX WITH SRY DNA
PDB header DNA BINDING PROTEIN/DNA
Date 2002-05-15
Experimental method SOLUTION NMR
Resolution (A) N/A
Kind dna
Organism SACCHAROMYCES CEREVISIAE
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CATH PDBsum HSSP PDBePISA UniProt
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1j5n.pdb A BC 20
NMR models:
1j5n.MDL1.pdb A BC 1
1j5n.MDL2.pdb A BC 1
1j5n.MDL3.pdb A BC 1
1j5n.MDL4.pdb A BC 1
1j5n.MDL5.pdb A BC 1
1j5n.MDL6.pdb A BC 1
1j5n.MDL7.pdb A BC 1
1j5n.MDL8.pdb A BC 1
1j5n.MDL9.pdb A BC 1
1j5n.MDL10.pdb A BC 1
1j5n.MDL11.pdb A BC 1
1j5n.MDL12.pdb A BC 1
1j5n.MDL13.pdb A BC 1
1j5n.MDL14.pdb A BC 1
1j5n.MDL15.pdb A BC 1
1j5n.MDL16.pdb A BC 1
1j5n.MDL17.pdb A BC 1
1j5n.MDL18.pdb A BC 1
1j5n.MDL19.pdb A BC 1
1j5n.MDL20.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HMG_box Domain P11632_21-89 1.2e-26 1 CL0114 A 21 89 BC  H-Bb H-Mj H-Mn L-Bb L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: HMG-box
    Superfamily: HMG-box
      Family: HMG-box
NHP6a A N/A N/A BC -
GO terms
Protein chains: GO type: GO description:
A=1-93 C nuclear chromatin
A=1-93 C nucleus
A=1-93 C protein-DNA complex
A=1-93 F DNA binding, bending
A=1-93 F MutSalpha complex binding
A=1-93 F nucleosome binding
A=1-93 P chromatin remodeling
A=1-93 P DNA replication-independent nucleosome organization
A=1-93 P maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase III promoter
A=1-93 P mismatch repair
A=1-93 P negative regulation of DNA binding
A=1-93 P protein-DNA complex assembly
A=1-93 P regulation of transcription by RNA polymerase II
A=1-93 P RNA polymerase II preinitiation complex assembly
A=1-93 P RNA polymerase III preinitiation complex assembly
Sequences
Download file with secondary structure created by Stride  
1j5n.MDL1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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