General information
PDB ID 1JEY
Title CRYSTAL STRUCTURE OF THE KU HETERODIMER BOUND TO DNA
PDB header DNA BINDING PROTEIN/DNA
Date 2001-06-19
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.5
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1jey.pdb AB CD 0
Biounits:
1jey.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ku_N Domain P12956_37-256 1.4e-71 1 CL0128 A 37 256   
Ku Domain P12956_263-464 6.8e-51 1 CL0616 A 263 467 CD  L-Bb 
Ku_N Domain P13010_9-244 7.3e-64 1 CL0128 B 9 244 D  L-Bb 
Ku Domain P13010_253-453 2e-44 1 CL0616 B 253 453 CD  S-Bb L-Bb L-Mn 
Ku_C Family P12956_472-534 1.7e-22 1 No_clan A 472 534   
Ku_C Family P13010_476-545 0.000000000013 1 No_clan B 476 545 C  H-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: SPOC domain-like
    Superfamily: SPOC domain-like
      Family: Ku70 subunit middle domain
Ku70 subunit middle domain A 254 534 CD -
Class: Alpha and beta proteins (a/b)
  Fold: vWA-like
    Superfamily: vWA-like
      Family: Ku70 subunit N-terminal domain
Ku70 subunit N-terminal domain A 34 253 -
Class: All beta proteins
  Fold: SPOC domain-like
    Superfamily: SPOC domain-like
      Family: Ku80 subunit middle domain
Ku80 subunit middle domain B 242 545 CD -
Class: Alpha and beta proteins (a/b)
  Fold: vWA-like
    Superfamily: vWA-like
      Family: Ku80 subunit N-terminal domain
Ku80 subunit N-terminal domain B 6 241 D -
GO terms
Protein chains: GO type: GO description:
A=1-609 C membrane fraction
A=1-609 C transcription factor complex
A=1-609 F 5'-deoxyribose-5-phosphate lyase activity
A=1-609 P response to ionizing radiation
A=1-609 P DNA ligation
A=1-609 P V(D)J recombination
A=1-609 P positive regulation of transcription from RNA polymerase II promoter
B=1-565 C cytoplasm
B=1-565 C Ku70:Ku80 complex
B=1-565 C nonhomologous end joining complex
B=1-565 C nuclear telomere cap complex
B=1-565 C DNA-dependent protein kinase-DNA ligase 4 complex
B=1-565 C nucleoplasm
B=1-565 F double-stranded DNA binding
B=1-565 F ATP-dependent DNA helicase activity
B=1-565 F telomeric DNA binding
B=1-565 F ATP binding
B=1-565 F transcription regulatory region DNA binding
B=1-565 P initiation of viral infection
B=1-565 P hemopoietic stem cell differentiation
B=1-565 P transcription, DNA-dependent
B=1-565 P cell proliferation
B=1-565 P provirus integration
B=1-565 P telomere maintenance
B=1-565 P double-strand break repair via nonhomologous end joining
B=1-565 P negative regulation of transcription, DNA-dependent
B=1-565 P negative regulation of apoptotic process
B=1-565 P positive regulation of neurogenesis
Sequences
Download file with secondary structure created by Stride  
1jey.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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