General information
PDB ID 1JGO
Title THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
PDB header RIBOSOME
Date 2001-06-26
Experimental method X-RAY DIFFRACTION
Resolution (A) 5.6
Kind rna
Organism THERMUS THERMOPHILUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1jgo.pdb EFGHIJKLMNOPQRSTUVWX ABCD1 0
Biounits:
1jgo.pdb1.pdb EFGHIJKLMNOPQRSTUVWX ABCD1 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S3_C Domain 1.5e-33 1 No_clan F 120 202
KH_2 Domain 2.1e-18 1 CL0007 F 38 111
S4 Domain P80373_99-146 1.8e-23 1 CL0492 G 99 146   
Ribosomal_S5_C Domain Q5SHQ5_81-152 2e-28 1 CL0329 H 81 152   
Ribosomal_S5 Domain Q5SHQ5_6-70 2.6e-23 1 CL0196 H 6 70   
Ribosomal_S6 Domain Q5SLP8_3-92 4.7e-21 1 No_clan I 3 92   
Ribosomal_S7 Domain P17291_2-149 8.1e-63 1 No_clan J 2 149   
Ribosomal_S8 Domain A0A0M9AFS9_4-138 1.4e-49 1 No_clan K 4 138   
Ribosomal_S15 Domain Q5SJ76_8-88 5.1e-39 1 CL0600 R 8 88   
Ribosomal_S17 Domain A0A0N0BLS5_8-75 1.7e-32 1 CL0021 T 8 75   
Ribosomal_S19 Domain Q5SHP2_3-83 2.5e-36 1 No_clan V 3 81   
Ribosomal_S2 Family P80371_10-225 3.6e-91 1 CL0067 E 10 225   
Ribosomal_S4 Family P80373_3-98 3.4e-32 1 CL0492 G 3 98   
Ribosomal_S9 Family P80374_8-128 4.9e-44 1 CL0329 L 8 128   
Ribosomal_S10 Family Q5SHN7_5-99 7.5e-34 1 No_clan M 5 99   
Ribosomal_S11 Family P80376_17-126 1.7e-42 1 CL0267 N 17 126   
Ribosom_S12_S23 Family Q5SHN3_12-123 2.4e-43 1 CL0021 O 15 126   
Ribosomal_S13 Family P80377_3-109 8.9e-33 1 CL0303 P 3 109   
Ribosomal_S14 Family A0A0N0BLP2_9-60 2.2e-23 1 No_clan Q 9 60   
Ribosomal_S16 Family Q5SJH3_8-67 2.1e-26 1 No_clan S 8 67   
Ribosomal_S18 Family Q5SLQ0_30-79 1.9e-22 1 No_clan U 30 79   
Ribosomal_S20p Family P80380_8-89 1.4e-20 1 No_clan W 8 89   
LUC7 Family 0.00058 0 No_clan W 9 103
Thx Family Q5SIH3_2-25 0.0000000000000022 1 No_clan X 2 25   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex E N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex F N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex G N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex H N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex I N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex J N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex K N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex L N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex M N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex N N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex O N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex P N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex Q N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex R N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex S N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex T N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex U N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex V N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex W N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex X N/A N/A -
GO terms
Protein chains: GO type: GO description:
F=95-98, G=1-209 F metal ion binding
H=1-162 C small ribosomal subunit
M=1-105 C ribosome
M=1-105 F rRNA binding
M=1-105 F structural constituent of ribosome
M=1-105 P translation
O=2-132 F tRNA binding
Sequences
Download file with secondary structure created by Stride  
1jgo.pdb1.pdb:   [ download sequences in FASTA format ]
E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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1 (rna): 
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A (rna): 
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B (rna): 
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C (rna): 
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D (rna): 
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