General information
PDB ID 1K3W
Title CRYSTAL STRUCTURE OF A TRAPPED REACTION INTERMEDIATE OF THE DNA REPAIR ENZYME ENDONUCLEASE VIII WITH DNA
PDB header HYDROLASE/DNA
Date 2001-10-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.42
Kind dna
Organism ESCHERICHIA COLI
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CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1k3w.pdb A BC 0
Biounits:
1k3w.pdb1.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
H2TH Domain P50465_126-215 0.00000000012 1 CL0303 A 125 224 C   
Fapy_DNA_glyco Domain P50465_2-107 0.00000000037 1 No_clan A 1 106 BC   
zf-FPG_IleRS Domain P50465_235-263 0.000000024 1 CL0167 A 234 262 C   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: S13-like H2TH domain
    Superfamily: S13-like H2TH domain
      Family: Middle domain of MutM-like DNA repair proteins
Endonuclease VIII A 125 214 C  L-Bb 
Class: All beta proteins
  Fold: N-terminal domain of MutM-like DNA repair proteins
    Superfamily: N-terminal domain of MutM-like DNA repair proteins
      Family: N-terminal domain of MutM-like DNA repair proteins
Endonuclease VIII A 1 124 BC  S-Bb L-Bb L-Mj L-Mn 
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
Endonuclease VIII A 223 262 C  S-Bb 
GO terms
Protein chains: GO type: GO description:
A=2-263 F zinc ion binding
A=2-263 F hydrolase activity, hydrolyzing N-glycosyl compounds
A=2-263 F endonuclease activity
A=2-263 F DNA-(apurinic or apyrimidinic site) lyase activity
A=2-263 F damaged DNA binding
A=2-263 P nucleotide-excision repair
A=2-263 P base-excision repair
Sequences
Download file with secondary structure created by Stride  
1k3w.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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