General information
PDB ID 1K82
Title CRYSTAL STRUCTURE OF E.COLI FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE (FPG) COVALENTLY TRAPPED WITH DNA
PDB header HYDROLASE/DNA
Date 2001-10-22
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.1
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1k82.pdb ABCD EIFJGKHL 0
Biounits:
1k82.pdb1.pdb A EI 1
1k82.pdb2.pdb B FJ 1
1k82.pdb3.pdb C GK 1
1k82.pdb4.pdb D HL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
H2TH Domain P05523_129-217 6.6e-33 1 CL0303 A 128 226 EI  H-Bb L-Bb 
Fapy_DNA_glyco Domain P05523_2-114 2e-30 1 No_clan A 1 113 EI  S-Bb L-Bb L-Mj L-Mn 
zf-FPG_IleRS Domain P05523_241-269 1.9e-09 1 CL0167 A 240 268 EI  S-Bb S-Mj L-Bb L-Mj 
H2TH Domain P05523_129-217 6.6e-33 1 CL0303 B 128 226 FJ  H-Bb L-Bb 
Fapy_DNA_glyco Domain P05523_2-114 2e-30 1 No_clan B 1 113 FJ  S-Bb L-Bb L-Mj L-Mn 
zf-FPG_IleRS Domain P05523_241-269 1.9e-09 1 CL0167 B 240 268 FJ  S-Bb S-Mj L-Bb L-Mj 
H2TH Domain P05523_129-217 6.6e-33 1 CL0303 C 128 226 GK  H-Bb L-Bb 
Fapy_DNA_glyco Domain P05523_2-114 2e-30 1 No_clan C 1 113 GK  S-Bb L-Bb L-Mj L-Mn 
zf-FPG_IleRS Domain P05523_241-269 1.9e-09 1 CL0167 C 240 268 GK  S-Bb S-Mj L-Bb L-Mj 
H2TH Domain P05523_129-217 6.6e-33 1 CL0303 D 128 226 HL  H-Bb L-Bb 
Fapy_DNA_glyco Domain P05523_2-114 2e-30 1 No_clan D 1 113 HL  S-Bb L-Bb L-Mj L-Mn 
zf-FPG_IleRS Domain P05523_241-269 1.9e-09 1 CL0167 D 240 268 LH  S-Bb S-Mj L-Bb L-Mj 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: S13-like H2TH domain
    Superfamily: S13-like H2TH domain
      Family: Middle domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) A 129 216 EI  L-Bb 
Class: All alpha proteins
  Fold: S13-like H2TH domain
    Superfamily: S13-like H2TH domain
      Family: Middle domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) B 129 216 FJ  L-Bb 
Class: All alpha proteins
  Fold: S13-like H2TH domain
    Superfamily: S13-like H2TH domain
      Family: Middle domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) C 129 216 GK  L-Bb 
Class: All alpha proteins
  Fold: S13-like H2TH domain
    Superfamily: S13-like H2TH domain
      Family: Middle domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) D 129 216 HL  L-Bb 
Class: All beta proteins
  Fold: N-terminal domain of MutM-like DNA repair proteins
    Superfamily: N-terminal domain of MutM-like DNA repair proteins
      Family: N-terminal domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) A 1 128 EI  S-Bb L-Bb L-Mn 
Class: All beta proteins
  Fold: N-terminal domain of MutM-like DNA repair proteins
    Superfamily: N-terminal domain of MutM-like DNA repair proteins
      Family: N-terminal domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) B 1 128 FJ  S-Bb L-Bb L-Mn 
Class: All beta proteins
  Fold: N-terminal domain of MutM-like DNA repair proteins
    Superfamily: N-terminal domain of MutM-like DNA repair proteins
      Family: N-terminal domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) C 1 128 GK  S-Bb L-Bb L-Mn 
Class: All beta proteins
  Fold: N-terminal domain of MutM-like DNA repair proteins
    Superfamily: N-terminal domain of MutM-like DNA repair proteins
      Family: N-terminal domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) D 1 128 HL  S-Bb L-Bb L-Mn 
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) A 225 268 EI  L-Bb L-Mj 
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) B 225 268 FJ  L-Bb L-Mj 
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) C 225 268 GK  L-Bb L-Mj 
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) D 225 268 LH  L-Bb L-Mj 
GO terms
Protein chains: GO type: GO description:
A/B/C/D=2-269 F 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity
A/B/C/D=2-269 F class I DNA-(apurinic or apyrimidinic site) endonuclease activity
A/B/C/D=2-269 F damaged DNA binding
A/B/C/D=2-269 F DNA N-glycosylase activity
A/B/C/D=2-269 F DNA-(apurinic or apyrimidinic site) endonuclease activity
A/B/C/D=2-269 F endonuclease activity
A/B/C/D=2-269 F metal ion binding
A/B/C/D=2-269 F oxidized purine nucleobase lesion DNA N-glycosylase activity
A/B/C/D=2-269 F oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
A/B/C/D=2-269 F zinc ion binding
A/B/C/D=2-269 P base-excision repair
A/B/C/D=2-269 P base-excision repair, AP site formation
A/B/C/D=2-269 P cellular response to DNA damage stimulus
A/B/C/D=2-269 P nucleotide-excision repair
Sequences
Download file with secondary structure created by Stride  
1k82.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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I (dna): 
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A (protein): 
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1k82.pdb2.pdb:   [ download sequences in FASTA format ]
F (dna): 
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J (dna): 
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B (protein): 
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1k82.pdb3.pdb:   [ download sequences in FASTA format ]
G (dna): 
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K (dna): 
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C (protein): 
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1k82.pdb4.pdb:   [ download sequences in FASTA format ]
H (dna): 
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L (dna): 
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D (protein): 
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