General information
PDB ID 1K82
Title CRYSTAL STRUCTURE OF E.COLI FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE (FPG) COVALENTLY TRAPPED WITH DNA
PDB header HYDROLASE/DNA
Date 2001-10-22
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.1
Kind dna
Organism ESCHERICHIA COLI
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1k82.pdb ABCD EIFJGKHL 0
Biounits:
1k82.pdb1.pdb A EI 1
1k82.pdb2.pdb B FJ 1
1k82.pdb3.pdb C GK 1
1k82.pdb4.pdb D HL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
H2TH Domain P05523_129-217 1.5e-31 1 CL0303 A 128 226 EI   
Fapy_DNA_glyco Domain P05523_2-114 4.3e-31 1 No_clan A 1 113 EI   
zf-FPG_IleRS Domain P05523_241-269 0.0000000012 1 CL0167 A 240 268 EI   
H2TH Domain P05523_129-217 1.5e-31 1 CL0303 B 128 226 FJ   
Fapy_DNA_glyco Domain P05523_2-114 4.3e-31 1 No_clan B 1 113 FJ   
zf-FPG_IleRS Domain P05523_241-269 0.0000000012 1 CL0167 B 240 268 FJ   
H2TH Domain P05523_129-217 1.5e-31 1 CL0303 C 128 226 GK   
Fapy_DNA_glyco Domain P05523_2-114 4.3e-31 1 No_clan C 1 113 GK   
zf-FPG_IleRS Domain P05523_241-269 0.0000000012 1 CL0167 C 240 268 GK   
H2TH Domain P05523_129-217 1.5e-31 1 CL0303 D 128 226 HL   
Fapy_DNA_glyco Domain P05523_2-114 4.3e-31 1 No_clan D 1 113 HL   
zf-FPG_IleRS Domain P05523_241-269 0.0000000012 1 CL0167 D 240 268 LH   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: S13-like H2TH domain
    Superfamily: S13-like H2TH domain
      Family: Middle domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) A 129 216 EI  L-Bb 
Class: All beta proteins
  Fold: N-terminal domain of MutM-like DNA repair proteins
    Superfamily: N-terminal domain of MutM-like DNA repair proteins
      Family: N-terminal domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) A 1 128 EI  S-Bb L-Bb L-Mn 
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) A 225 268 EI  L-Bb L-Mj 
Class: All alpha proteins
  Fold: S13-like H2TH domain
    Superfamily: S13-like H2TH domain
      Family: Middle domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) B 129 216 FJ  L-Bb 
Class: All beta proteins
  Fold: N-terminal domain of MutM-like DNA repair proteins
    Superfamily: N-terminal domain of MutM-like DNA repair proteins
      Family: N-terminal domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) B 1 128 FJ  S-Bb L-Bb L-Mn 
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) B 225 268 FJ  L-Bb L-Mj 
Class: All alpha proteins
  Fold: S13-like H2TH domain
    Superfamily: S13-like H2TH domain
      Family: Middle domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) C 129 216 GK  L-Bb 
Class: All beta proteins
  Fold: N-terminal domain of MutM-like DNA repair proteins
    Superfamily: N-terminal domain of MutM-like DNA repair proteins
      Family: N-terminal domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) C 1 128 GK  S-Bb L-Bb L-Mn 
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) C 225 268 GK  L-Bb L-Mj 
Class: All alpha proteins
  Fold: S13-like H2TH domain
    Superfamily: S13-like H2TH domain
      Family: Middle domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) D 129 216 HL  L-Bb 
Class: All beta proteins
  Fold: N-terminal domain of MutM-like DNA repair proteins
    Superfamily: N-terminal domain of MutM-like DNA repair proteins
      Family: N-terminal domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) D 1 128 HL  S-Bb L-Bb L-Mn 
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) D 225 268 LH  L-Bb L-Mj 
GO terms
Protein chains: GO type: GO description:
A/B/C/D=2-269 C soluble fraction
A/B/C/D=2-269 F zinc ion binding
A/B/C/D=2-269 F damaged DNA binding
A/B/C/D=2-269 F oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
A/B/C/D=2-269 F endonuclease activity
A/B/C/D=2-269 F oxidized purine nucleobase lesion DNA N-glycosylase activity
A/B/C/D=2-269 P nucleotide-excision repair
A/B/C/D=2-269 P base-excision repair, AP site formation
Sequences
Download file with secondary structure created by Stride  
1k82.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
I (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
1k82.pdb2.pdb:   [ download sequences in FASTA format ]
F (dna): 
Click "SHOW" for view sequence
J (dna): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
1k82.pdb3.pdb:   [ download sequences in FASTA format ]
G (dna): 
Click "SHOW" for view sequence
K (dna): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
1k82.pdb4.pdb:   [ download sequences in FASTA format ]
H (dna): 
Click "SHOW" for view sequence
L (dna): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text