General information
PDB ID 1K8W
Title CRYSTAL STRUCTURE OF THE E. COLI PSEUDOURIDINE SYNTHASE TRUB BOUND TO A T STEM-LOOP RNA
PDB header LYASE/RNA
Date 2001-10-25
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.85
Kind rna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1k8w.pdb A B 0
Biounits:
1k8w.pdb1.pdb A B 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TruB-C_2 Domain P60340_252-309 2.4e-19 1 CL0178 A 252 309 B   
TruB_N Family P60340_33-180 1.2e-57 1 CL0649 A 33 180 B   
TruB_C_2 Family P60340_181-249 6.1e-22 1 CL0649 A 181 249   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: PUA domain-like
    Superfamily: PUA domain-like
      Family: PUA domain
Pseudouridine synthase II TruB, C-terminal domain A 251 312 B -
Class: Alpha and beta proteins (a+b)
  Fold: Pseudouridine synthase
    Superfamily: Pseudouridine synthase
      Family: Pseudouridine synthase II TruB
Pseudouridine synthase II TruB A 9 250 B -
GO terms
Protein chains: GO type: GO description:
A=10-314 F pseudouridine synthase activity
A=10-314 F RNA binding
A=10-314 P tRNA processing
A=10-314 P pseudouridine synthesis
Sequences
Download file with secondary structure created by Stride  
1k8w.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (rna): 
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