NPIDB: 1KFV structure

General information

PDB ID

1KFV

Title

CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS FORMAMIDO-PYRIMIDINE DNA GLYCOSYLASE (ALIAS FPG OR MUTM) NON COVALENTLY BOUND TO AN AP SITE CONTAINING DNA.

PDB header

HYDROLASE/DNA

Date

2001-11-23

Experimental method

X-RAY DIFFRACTION

Resolution (A)

2.55

Kind

dna

Organism

LACTOCOCCUS LACTIS


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PDB	PDBe	MMDB	Jena	OCA
CATH	PDBsum	HSSP	PDBePISA	UniProt
ProteopediA	BIPA

Composition of PDB entry and biounits
File:	Protein chains:	DNA chains:	RNA chains:	No. of models:	Action:

PDB entry:

pdb1kfv.pdb	AB	DEGH		0

Biounits:

1kfv.pdb1.pdb	A	DE		1
1kfv.pdb2.pdb	B	GH		1

Pfam domains
Name:	Type:	Domain:	E-value:	Significance:	Clan:	Prot. chain:	Start res.:	End res.:	Nuc. chains:	Int. mode:	Action:

H2TH	Domain	P42371_132-219	1e-33	1	CL0303	A	131	230	D	H-Bb
Fapy_DNA_glyco	Domain	P42371_2-115	3.3e-21	1	No_clan	A	1	114	DE	S-Bb L-Bb L-Mj L-Mn
zf-FPG_IleRS	Domain	P42371_244-272	7.6e-12	1	CL0167	A	242	270	D	S-Bb
H2TH	Domain	P42371_132-219	4.2e-33	1	CL0303	B	131	234	G	H-Bb
Fapy_DNA_glyco	Domain	P42371_2-115	3.1e-21	1	No_clan	B	1	114	GH	S-Bb L-Bb L-Mj L-Mn
zf-FPG_IleRS	Domain	P42371_244-272	7.4e-12	1	CL0167	B	242	270	G	S-Bb

SCOP domains
Classification:	Protein:	Prot. chain:	Start res.:	End res.:	Nuc. chains:	Int. mode:	Action:

Class: All alpha proteins Fold: S13-like H2TH domain Superfamily: S13-like H2TH domain Family: Middle domain of MutM-like DNA repair proteins	DNA repair protein MutM (Fpg)	A	132	219	D	H-Bb
Class: All alpha proteins Fold: S13-like H2TH domain Superfamily: S13-like H2TH domain Family: Middle domain of MutM-like DNA repair proteins	DNA repair protein MutM (Fpg)	B	132	217	G	H-Bb
Class: All beta proteins Fold: N-terminal domain of MutM-like DNA repair proteins Superfamily: N-terminal domain of MutM-like DNA repair proteins Family: N-terminal domain of MutM-like DNA repair proteins	DNA repair protein MutM (Fpg)	A	1	131	DE	S-Bb L-Bb L-Mj L-Mn
Class: All beta proteins Fold: N-terminal domain of MutM-like DNA repair proteins Superfamily: N-terminal domain of MutM-like DNA repair proteins Family: N-terminal domain of MutM-like DNA repair proteins	DNA repair protein MutM (Fpg)	B	1	131	GH	S-Bb L-Bb L-Mj L-Mn
Class: Small proteins Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins	DNA repair protein MutM (Fpg)	A	227	271	D	S-Bb
Class: Small proteins Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins	DNA repair protein MutM (Fpg)	B	229	271	G	S-Bb

GO terms
Protein chains:	GO type:	GO description:
A/B=2-273	F	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
A/B=2-273	F	damaged DNA binding
A/B=2-273	F	oxidized purine nucleobase lesion DNA N-glycosylase activity
A/B=2-273	F	zinc ion binding
A/B=2-273	P	base-excision repair
A/B=2-273	P	nucleotide-excision repair

Sequences

Download file with secondary structure created by Stride

1kfv.pdb1.pdb: [ download sequences in FASTA format ]

D (dna):