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Composition of PDB entry and biounits
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File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
PDB entry: | |||||
pdb1kfv.pdb | AB | DEGH | 0 |
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Biounits: | |||||
1kfv.pdb1.pdb | A | DE | 1 |
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1kfv.pdb2.pdb | B | GH | 1 |
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Pfam domains
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Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
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Domain | P42371_132-219 | 2.4e-32 | 1 |
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A | 131 | 229 | D | H-Bb |
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Domain | P42371_2-115 | 6.4e-22 | 1 | No_clan | A | 1 | 114 | DE | S-Bb L-Bb L-Mj L-Mn |
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Domain | P42371_244-273 | 5.8e-12 | 1 |
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A | 242 | 271 | D | S-Bb |
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Domain | P42371_132-219 | 7.9e-32 | 1 |
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B | 131 | 234 | G | H-Bb |
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Domain | P42371_2-115 | 6.2e-22 | 1 | No_clan | B | 1 | 114 | GH | S-Bb L-Bb L-Mj L-Mn |
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Domain | P42371_244-273 | 5.7e-12 | 1 |
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B | 242 | 271 | G | S-Bb |
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SCOP domains
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Classification: | Protein: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
DNA repair protein MutM (Fpg) | A | 132 | 219 | D | H-Bb |
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DNA repair protein MutM (Fpg) | B | 132 | 217 | G | H-Bb |
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DNA repair protein MutM (Fpg) | A | 1 | 131 | DE | S-Bb L-Bb L-Mj L-Mn |
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DNA repair protein MutM (Fpg) | B | 1 | 131 | GH | S-Bb L-Bb L-Mj L-Mn |
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DNA repair protein MutM (Fpg) | A | 227 | 271 | D | S-Bb |
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DNA repair protein MutM (Fpg) | B | 229 | 271 | G | S-Bb |
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GO terms | ||
Protein chains: | GO type: | GO description: |
A/B=2-273 | F | class I DNA-(apurinic or apyrimidinic site) endonuclease activity |
A/B=2-273 | F | damaged DNA binding |
A/B=2-273 | F | oxidized purine nucleobase lesion DNA N-glycosylase activity |
A/B=2-273 | F | zinc ion binding |
A/B=2-273 | P | base-excision repair |
A/B=2-273 | P | nucleotide-excision repair |
Sequences
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1kfv.pdb1.pdb:
[
download sequences in FASTA format
]
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D (dna):
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E (dna):
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A (protein):
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1kfv.pdb2.pdb:
[
download sequences in FASTA format
]
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G (dna):
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H (dna):
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B (protein):
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