General information
PDB ID 1KFV
Title CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS FORMAMIDO-PYRIMIDINE DNA GLYCOSYLASE (ALIAS FPG OR MUTM) NON COVALENTLY BOUND TO AN AP SITE CONTAINING DNA.
PDB header HYDROLASE/DNA
Date 2001-11-23
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.55
Kind dna
Organism LACTOCOCCUS LACTIS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1kfv.pdb AB DEGH 0
Biounits:
1kfv.pdb1.pdb A DE 1
1kfv.pdb2.pdb B GH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
H2TH Domain P42371_132-219 2.4e-32 1 CL0303 A 131 229 D   
Fapy_DNA_glyco Domain P42371_2-115 6.4e-22 1 No_clan A 1 114 DE   
zf-FPG_IleRS Domain P42371_244-273 5.8e-12 1 CL0167 A 242 271 D   
H2TH Domain P42371_132-219 7.9e-32 1 CL0303 B 131 234 G   
Fapy_DNA_glyco Domain P42371_2-115 6.2e-22 1 No_clan B 1 114 GH   
zf-FPG_IleRS Domain P42371_244-273 5.7e-12 1 CL0167 B 242 271 G   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: S13-like H2TH domain
    Superfamily: S13-like H2TH domain
      Family: Middle domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) A 132 219 D  H-Bb 
Class: All alpha proteins
  Fold: S13-like H2TH domain
    Superfamily: S13-like H2TH domain
      Family: Middle domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) B 132 217 G  H-Bb 
Class: All beta proteins
  Fold: N-terminal domain of MutM-like DNA repair proteins
    Superfamily: N-terminal domain of MutM-like DNA repair proteins
      Family: N-terminal domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) A 1 131 DE  S-Bb L-Bb L-Mj L-Mn 
Class: All beta proteins
  Fold: N-terminal domain of MutM-like DNA repair proteins
    Superfamily: N-terminal domain of MutM-like DNA repair proteins
      Family: N-terminal domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) B 1 131 GH  S-Bb L-Bb L-Mj L-Mn 
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) A 227 271 D  S-Bb 
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
DNA repair protein MutM (Fpg) B 229 271 G  S-Bb 
GO terms
Protein chains: GO type: GO description:
A/B=3-273 F oxidized purine nucleobase lesion DNA N-glycosylase activity
A/B=3-273 F damaged DNA binding
A/B=3-273 F zinc ion binding
A/B=3-273 P nucleotide-excision repair
A/B=3-273 P base-excision repair
Sequences
Download file with secondary structure created by Stride  
1kfv.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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A (protein): 
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1kfv.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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B (protein): 
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