General information
PDB ID 1KSX
Title CRYSTAL STRUCTURES OF TWO INTERMEDIATES IN THE ASSEMBLY OF THE PAPILLOMAVIRUS REPLICATION INITIATION COMPLEX
PDB header REPLICATION/DNA
Date 2002-01-14
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.2
Kind dna
Organism BOVINE PAPILLOMAVIRUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1ksx.pdb ABEFIJMN CGKO 0
Biounits:
1ksx.pdb1.pdb ABEF CG 1
1ksx.pdb2.pdb IJMN KO 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PPV_E1_C Family P03116_166-303 3.5e-46 1 CL0023 A 166 303 CG   
PPV_E1_C Family P03116_166-303 3.5e-46 1 CL0023 B 166 303 CG   
PPV_E1_C Family P03116_166-303 3.5e-46 1 CL0023 E 166 303 CG   
PPV_E1_C Family P03116_166-303 3.5e-46 1 CL0023 F 166 303 CG   
PPV_E1_C Family P03116_166-303 3.5e-46 1 CL0023 I 166 303 KO  H-Bb S-Bb S-Mj L-Bb L-Mj 
PPV_E1_C Family P03116_166-303 3.5e-46 1 CL0023 J 166 303 KO  S-Bb S-Mj L-Bb L-Mj 
PPV_E1_C Family P03116_166-303 3.5e-46 1 CL0023 M 166 303 KO  H-Bb S-Bb S-Mj L-Bb L-Mj 
PPV_E1_C Family P03116_166-303 3.5e-46 1 CL0023 N 166 303 KO  S-Bb S-Mj L-Bb L-Mj 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: Origin of replication-binding domain, RBD-like
    Superfamily: Origin of replication-binding domain, RBD-like
      Family: Replication initiation protein E1
Replication initiation protein E1 A N/A N/A CG  H-Bb S-Bb L-Bb L-Mj 
Class: Alpha and beta proteins (a+b)
  Fold: Origin of replication-binding domain, RBD-like
    Superfamily: Origin of replication-binding domain, RBD-like
      Family: Replication initiation protein E1
Replication initiation protein E1 B N/A N/A CG  S-Bb L-Bb L-Mj 
Class: Alpha and beta proteins (a+b)
  Fold: Origin of replication-binding domain, RBD-like
    Superfamily: Origin of replication-binding domain, RBD-like
      Family: Replication initiation protein E1
Replication initiation protein E1 E N/A N/A CG  H-Bb S-Bb L-Bb L-Mj 
Class: Alpha and beta proteins (a+b)
  Fold: Origin of replication-binding domain, RBD-like
    Superfamily: Origin of replication-binding domain, RBD-like
      Family: Replication initiation protein E1
Replication initiation protein E1 F N/A N/A CG  S-Bb L-Bb L-Mj 
Class: Alpha and beta proteins (a+b)
  Fold: Origin of replication-binding domain, RBD-like
    Superfamily: Origin of replication-binding domain, RBD-like
      Family: Replication initiation protein E1
Replication initiation protein E1 I N/A N/A KO  H-Bb S-Bb L-Bb L-Mj 
Class: Alpha and beta proteins (a+b)
  Fold: Origin of replication-binding domain, RBD-like
    Superfamily: Origin of replication-binding domain, RBD-like
      Family: Replication initiation protein E1
Replication initiation protein E1 J N/A N/A KO  S-Bb L-Bb L-Mj 
Class: Alpha and beta proteins (a+b)
  Fold: Origin of replication-binding domain, RBD-like
    Superfamily: Origin of replication-binding domain, RBD-like
      Family: Replication initiation protein E1
Replication initiation protein E1 M N/A N/A KO  H-Bb S-Bb L-Bb L-Mj 
Class: Alpha and beta proteins (a+b)
  Fold: Origin of replication-binding domain, RBD-like
    Superfamily: Origin of replication-binding domain, RBD-like
      Family: Replication initiation protein E1
Replication initiation protein E1 N N/A N/A KO  S-Bb L-Bb L-Mj 
GO terms
Protein chains: GO type: GO description:
A/B/E/F/I/J/M/N=159-303 C host cell nucleus
A/B/E/F/I/J/M/N=159-303 F ATP-dependent DNA helicase activity
A/B/E/F/I/J/M/N=159-303 F ATP binding
A/B/E/F/I/J/M/N=159-303 F DNA binding
A/B/E/F/I/J/M/N=159-303 P DNA replication
Sequences
Download file with secondary structure created by Stride  
1ksx.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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G (dna): 
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A (protein): 
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B (protein): 
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E (protein): 
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F (protein): 
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1ksx.pdb2.pdb:   [ download sequences in FASTA format ]
K (dna): 
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O (dna): 
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I (protein): 
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J (protein): 
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M (protein): 
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N (protein): 
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