General information
PDB ID 1KX4
Title X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE, NCP146B, AT 2.6 A RESOLUTION
PDB header STRUCTURAL PROTEIN/DNA
Date 2002-01-31
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.6
Kind dna
Organism HOMO SAPIENS, XENOPUS LAEVIS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1kx4.pdb ABCDEFGH IJ 0
Biounits:
1kx4.pdb1.pdb ABCDEFGH IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_39-132 7.1e-46 1 CL0012 A 38 131 IJ   
CENP-T_C Domain P62799_18-99 0.0000000095 1 CL0012 B 24 98 IJ   
Histone Domain P06897_13-91 0.000000000000001 1 CL0012 C 16 90 IJ   
Histone Domain P02281_28-102 7.3e-23 1 CL0012 D 24 98 IJ   
Histone Domain P84233_39-132 2.2e-45 1 CL0012 E 39 131 IJ   
CENP-T_C Domain P62799_26-99 0.0000000085 1 CL0012 F 26 98 IJ   
Histone Domain P06897_13-91 7.8e-16 1 CL0012 G 14 90 IJ   
Histone Domain P02281_33-102 1e-21 1 CL0012 H 29 98 IJ   
Histone_H2A_C Family P06897_92-120 2e-17 1 No_clan C 91 118   
Histone_H2A_C Family P06897_92-120 2e-17 1 No_clan G 91 118   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H3 A N/A N/A IJ  H-Bb L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H4 B N/A N/A IJ  H-Bb S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2A C N/A N/A IJ  H-Bb S-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2B D N/A N/A IJ  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H3 E N/A N/A IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H4 F N/A N/A IJ  S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2A G N/A N/A IJ  H-Bb S-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2B H N/A N/A IJ  H-Bb L-Bb 
GO terms
Protein chains: GO type: GO description:
A/E=2-136 C nucleosome
A/E=2-136 C nucleus
A/E=2-136 F DNA binding
A/E=2-136 P nucleosome assembly
Sequences
Download file with secondary structure created by Stride  
1kx4.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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