General information
PDB ID 1KX5
Title X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE, NCP147, AT 1.9 A RESOLUTION
PDB header STRUCTURAL PROTEIN/DNA
Date 2002-01-31
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.94
Kind dna
Organism XENOPUS LAEVIS
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1kx5.pdb ABCDEFGH IJ 0
Biounits:
1kx5.pdb1.pdb ABCDEFGH IJ 1
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
Histone Domain 1.7e-52 1 CL0012 A 1 131 IJ
CENP-T_C Domain 0.000000016 1 CL0012 B 17 98 IJ
Histone Domain 9.6e-17 1 CL0012 C 1 90 IJ
Histone Domain 5.1e-25 1 CL0012 D 1 98 IJ
Histone Domain 1.7e-52 1 CL0012 E 1 131 IJ
CENP-T_C Domain 0.000000016 1 CL0012 F 17 98 IJ
Histone Domain 9.6e-17 1 CL0012 G 1 90 IJ
Histone Domain 5.1e-25 1 CL0012 H 1 98 IJ
Histone_H2A_C Family 1.9e-20 1 No_clan C 91 125 J
Histone_H2A_C Family 1.9e-20 1 No_clan G 91 125
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H3 A N/A N/A IJ  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H4 B N/A N/A IJ  H-Bb S-Bb L-Bb L-Mj 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2A C N/A N/A IJ  H-Bb S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2B D N/A N/A IJ  L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H3 E N/A N/A IJ  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H4 F N/A N/A IJ  S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2A G N/A N/A IJ  H-Bb S-Bb L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2B H N/A N/A IJ  L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
A/E=2-136 C nucleosome
A/E=2-136 C nucleus
A/E=2-136 F DNA binding
A/E=2-136 P nucleosome assembly
Sequences
Download file with secondary structure created by Stride  
1kx5.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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