General information
PDB ID 1L3L
Title CRYSTAL STRUCTURE OF A BACTERIAL QUORUM-SENSING TRANSCRIPTION FACTOR COMPLEXED WITH PHEROMONE AND DNA
PDB header TRANSCRIPTION/DNA
Date 2002-02-27
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.66
Kind dna
Organism AGROBACTERIUM TUMEFACIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1l3l.pdb ABCD EFGH 0
Biounits:
1l3l.pdb1.pdb BD EG 1
1l3l.pdb2.pdb AC FH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Autoind_bind Domain P33905_20-159 1.1e-22 1 CL0161 A 20 159   
GerE Domain P33905_172-228 0.000000000036 1 CL0123 A 172 228 FH   
Autoind_bind Domain P33905_20-159 1.1e-22 1 CL0161 B 20 159   
GerE Domain P33905_172-228 0.000000000036 1 CL0123 B 172 228 EG  H-Bb H-Mj L-Bb 
Autoind_bind Domain P33905_20-159 9.4e-23 1 CL0161 C 20 159   
GerE Domain P33905_172-228 0.000000000034 1 CL0123 C 172 228 FH   
Autoind_bind Domain P33905_20-159 9.4e-23 1 CL0161 D 20 159   
GerE Domain P33905_172-228 0.000000000034 1 CL0123 D 172 228 EG  H-Bb H-Mj L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: C-terminal effector domain of the bipartite response regulators
      Family: GerE-like (LuxR/UhpA family of transcriptional regulators)
Quorum-sensing transcription factor TraR, C-terminal domain A 170 234 FH  H-Bb H-Mj L-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: Profilin-like
    Superfamily: Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
      Family: Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
Transcription factor TraR, N-terminal domain A 2 169 -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: C-terminal effector domain of the bipartite response regulators
      Family: GerE-like (LuxR/UhpA family of transcriptional regulators)
Quorum-sensing transcription factor TraR, C-terminal domain B 170 234 EG  H-Bb H-Mj L-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: Profilin-like
    Superfamily: Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
      Family: Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
Transcription factor TraR, N-terminal domain B 2 169 -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: C-terminal effector domain of the bipartite response regulators
      Family: GerE-like (LuxR/UhpA family of transcriptional regulators)
Quorum-sensing transcription factor TraR, C-terminal domain C 172 234 FH  H-Bb H-Mj 
Class: Alpha and beta proteins (a+b)
  Fold: Profilin-like
    Superfamily: Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
      Family: Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
Transcription factor TraR, N-terminal domain C 1 162 -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: C-terminal effector domain of the bipartite response regulators
      Family: GerE-like (LuxR/UhpA family of transcriptional regulators)
Quorum-sensing transcription factor TraR, C-terminal domain D 172 234 EG  H-Bb H-Mj L-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: Profilin-like
    Superfamily: Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
      Family: Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
Transcription factor TraR, N-terminal domain D 1 162 -
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-234 C intracellular
A/B/C/D=1-234 F sequence-specific DNA binding
A/B/C/D=1-234 F sequence-specific DNA binding transcription factor activity
A/B/C/D=1-234 F two-component response regulator activity
A/B/C/D=1-234 P intracellular signal transduction
A/B/C/D=1-234 P conjugation
A/B/C/D=1-234 P transcription, DNA-dependent
A/B/C/D=1-234 P quorum sensing
Sequences
Download file with secondary structure created by Stride  
1l3l.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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G (dna): 
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B (protein): 
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D (protein): 
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1l3l.pdb2.pdb:   [ download sequences in FASTA format ]
F (dna): 
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H (dna): 
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A (protein): 
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C (protein): 
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