General information
PDB ID 1L9Z
Title THERMUS AQUATICUS RNA POLYMERASE HOLOENZYME/FORK-JUNCTION PROMOTER DNA COMPLEX AT 6.5 A RESOLUTION
PDB header TRANSCRIPTION/DNA
Date 2002-03-27
Experimental method X-RAY DIFFRACTION
Resolution (A) 6.5
Kind dna
Organism THERMUS AQUATICUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1l9z.pdb ABCDEH UT 0
Biounits:
1l9z.pdb1.pdb ABCDEH UT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain Q9KWU8_52-179 3.6e-26 1 No_clan A 52 180   
RNA_pol_L Domain Q9KWU8_26-222 2.7e-24 1 CL0509 A 26 222   
RNA_pol_A_bac Domain Q9KWU8_52-179 3.4e-26 1 No_clan B 52 180   
RNA_pol_L Domain Q9KWU8_26-222 2.5e-24 1 CL0509 B 26 222   
RNA_pol_Rpb2_6 Domain Q9KWU7_596-1026 2.7e-146 1 CL0410 C 596 1026   
RNA_pol_Rpb2_3 Domain Q9KWU7_393-461 3.9e-29 1 No_clan C 393 461   
RNA_pol_Rpb2_7 Domain Q9KWU7_1028-1104 1.9e-26 1 No_clan C 1028 1104   
RNA_pol_Rpb2_45 Domain Q9KWU7_471-535 7.1e-24 1 No_clan C 471 535   
RNA_pol_Rpb2_2 Domain Q9KWU7_142-334 0.0000000013 1 No_clan C 142 334   
RNA_pol_Rpb1_1 Domain 9.3e-85 1 No_clan D 3 618
RNA_pol_Rpb1_2 Domain Q9KWU6_620-765 9e-36 1 No_clan D 620 765   
RNA_pol_Rpb1_5 Domain Q9KWU6_1064-1291 5.5e-34 1 No_clan D 1064 1259   
RNA_pol_Rpb1_3 Domain Q9KWU6_768-954 5.6e-30 1 No_clan D 768 954   
RNA_pol_Rpb1_4 Domain Q9KWU6_983-1069 0.0000000000000046 1 No_clan D 983 1069   
RNA_pol_Rpb1_5 Domain Q9KWU6_1269-1432 0.00000000000019 1 No_clan D 1264 1432   
Sigma70_r2 Domain Q9EZJ8_202-272 2.6e-20 1 CL0123 H 202 272   
Sigma70_r4 Domain Q9EZJ8_372-425 1.6e-18 1 CL0123 H 372 425 TU   
RNA_pol_Rpb2_1 Family Q9KWU7_17-380 2e-40 1 No_clan C 17 380   
RNA_pol_Rpb6 Family Q9EVV4_8-75 0.0000005 1 No_clan E 8 75   
Sigma70_r3 Family Q9EZJ8_281-360 1.1e-17 1 CL0123 H 281 363   
Sigma70_r1_2 Family Q9EZJ8_94-127 3.6e-16 1 No_clan H 94 127   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Low resolution protein structures
  Fold: RNA polymerase
    Superfamily: RNA polymerase
      Family: RNA polymerase
DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits A N/A N/A -
Class: Low resolution protein structures
  Fold: RNA polymerase
    Superfamily: RNA polymerase
      Family: RNA polymerase
DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits B N/A N/A -
Class: Low resolution protein structures
  Fold: RNA polymerase
    Superfamily: RNA polymerase
      Family: RNA polymerase
DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits C N/A N/A -
Class: Low resolution protein structures
  Fold: RNA polymerase
    Superfamily: RNA polymerase
      Family: RNA polymerase
DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits D N/A N/A -
Class: Low resolution protein structures
  Fold: RNA polymerase
    Superfamily: RNA polymerase
      Family: RNA polymerase
DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits E N/A N/A -
Class: Low resolution protein structures
  Fold: RNA polymerase
    Superfamily: RNA polymerase
      Family: RNA polymerase
DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits H N/A N/A TU -
GO terms
Protein chains: GO type: GO description:
A/B=1-314 P DNA repair
C=1-1119 F DNA binding
C=1-1119 F DNA-directed RNA polymerase activity
C=1-1119 F ribonucleoside binding
C=1-1119 P transcription, DNA-dependent
E=1-99 C RNA polymerase complex
Sequences
Download file with secondary structure created by Stride  
1l9z.pdb1.pdb:   [ download sequences in FASTA format ]
T (dna): 
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U (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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H (protein): 
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