General information
PDB ID 1LLM
Title CRYSTAL STRUCTURE OF A ZIF23-GCN4 CHIMERA BOUND TO DNA
PDB header TRANSCRIPTION/DNA
Date 2002-04-29
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.5
Kind dna
Organism MUS MUSCULUS, SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1llm.pdb CD AB 0
Biounits:
1llm.pdb1.pdb CD AB 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-H2C2_2 Domain P03069_271-296 6.4e-09 0 CL0361 C 118 143 B  H-Bb H-Mj S-Bb L-Bb L-Mj 
zf-H2C2_2 Domain P03069_271-296 6.1e-09 0 CL0361 D 218 243 AB  H-Bb H-Mj L-Bb L-Mj 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Small proteins
  Fold: beta-beta-alpha zinc fingers
    Superfamily: beta-beta-alpha zinc fingers
      Family: Classic zinc finger, C2H2
ZIF268 C 101 128 AB  H-Bb H-Mj L-Bb L-Mj 
Class: Small proteins
  Fold: beta-beta-alpha zinc fingers
    Superfamily: beta-beta-alpha zinc fingers
      Family: Classic zinc finger, C2H2
ZIF268 D 201 228 AB  H-Bb H-Mj L-Bb L-Mj 
Class: Small proteins
  Fold: beta-beta-alpha zinc fingers
    Superfamily: beta-beta-alpha zinc fingers
      Family: Classic zinc finger, C2H2
ZIF268 C 129 156 AB  H-Bb H-Mj L-Mj 
Class: Small proteins
  Fold: beta-beta-alpha zinc fingers
    Superfamily: beta-beta-alpha zinc fingers
      Family: Classic zinc finger, C2H2
ZIF268 D 229 256 AB  H-Bb H-Mj L-Mj 
GO terms
Protein chains: GO type: GO description:
C/D=253-281 C nuclear chromatin
C/D=253-281 C nucleoplasm
C/D=253-281 C nucleus
C/D=253-281 C transcription regulator complex
C/D=253-281 F chromatin binding
C/D=253-281 F DNA-binding transcription activator activity, RNA polymerase II-specific
C/D=253-281 F DNA-binding transcription factor activity
C/D=253-281 F DNA-binding transcription factor activity, RNA polymerase II-specific
C/D=253-281 F identical protein binding
C/D=253-281 F protein self-association
C/D=253-281 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
C/D=253-281 F RNA polymerase II transcription factor binding
C/D=253-281 F sequence-specific DNA binding
C/D=253-281 P autophagy
C/D=253-281 P cellular amino acid biosynthetic process
C/D=253-281 P negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter in response to nutrient levels
C/D=253-281 P negative regulation of transcription by RNA polymerase II
C/D=253-281 P nitrogen catabolite activation of transcription from RNA polymerase II promoter
C/D=253-281 P positive regulation of autophagy
C/D=253-281 P positive regulation of cellular response to amino acid starvation
C/D=253-281 P positive regulation of RNA polymerase II transcription preinitiation complex assembly
C/D=253-281 P positive regulation of transcription by RNA polymerase II
C/D=253-281 P positive regulation of transcription from RNA polymerase II promoter in response to nitrogen starvation
C/D=253-281 P positive regulation of transcription initiation from RNA polymerase II promoter
C/D=253-281 P protein localization to nuclear periphery
C/D=253-281 P response to organic substance
C/D=364-412 C cytoplasm
C/D=364-412 C nuclear chromatin
C/D=364-412 C nucleoplasm
C/D=364-412 C nucleus
C/D=364-412 F DNA binding
C/D=364-412 F DNA-binding transcription activator activity, RNA polymerase II-specific
C/D=364-412 F DNA-binding transcription factor activity
C/D=364-412 F DNA-binding transcription factor activity, RNA polymerase II-specific
C/D=364-412 F double-stranded DNA binding
C/D=364-412 F double-stranded methylated DNA binding
C/D=364-412 F hemi-methylated DNA-binding
C/D=364-412 F histone acetyltransferase binding
C/D=364-412 F promoter-specific chromatin binding
C/D=364-412 F RNA polymerase II core promoter sequence-specific DNA binding
C/D=364-412 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
C/D=364-412 F sequence-specific DNA binding
C/D=364-412 F sequence-specific double-stranded DNA binding
C/D=364-412 F transcription factor binding
C/D=364-412 F transcription regulatory region sequence-specific DNA binding
C/D=364-412 F zinc ion binding
C/D=364-412 P BMP signaling pathway
C/D=364-412 P cellular response to gamma radiation
C/D=364-412 P cellular response to heparin
C/D=364-412 P cellular response to interleukin-8
C/D=364-412 P cellular response to mycophenolic acid
C/D=364-412 P cellular response to organic substance
C/D=364-412 P circadian regulation of gene expression
C/D=364-412 P circadian temperature homeostasis
C/D=364-412 P estrous cycle
C/D=364-412 P glomerular mesangial cell proliferation
C/D=364-412 P interleukin-1-mediated signaling pathway
C/D=364-412 P learning or memory
C/D=364-412 P locomotor rhythm
C/D=364-412 P long-term memory
C/D=364-412 P negative regulation of canonical Wnt signaling pathway
C/D=364-412 P negative regulation of transcription by RNA polymerase II
C/D=364-412 P positive regulation of cell death
C/D=364-412 P positive regulation of chemokine biosynthetic process
C/D=364-412 P positive regulation of gene expression
C/D=364-412 P positive regulation of glomerular metanephric mesangial cell proliferation
C/D=364-412 P positive regulation of hormone biosynthetic process
C/D=364-412 P positive regulation of interleukin-1 beta production
C/D=364-412 P positive regulation of neuron apoptotic process
C/D=364-412 P positive regulation of neuron death
C/D=364-412 P positive regulation of pri-miRNA transcription by RNA polymerase II
C/D=364-412 P positive regulation of smooth muscle cell migration
C/D=364-412 P positive regulation of smooth muscle cell proliferation
C/D=364-412 P positive regulation of tau-protein kinase activity
C/D=364-412 P positive regulation of transcription by RNA polymerase II
C/D=364-412 P positive regulation of transcription, DNA-templated
C/D=364-412 P regulation of apoptotic process
C/D=364-412 P regulation of long-term neuronal synaptic plasticity
C/D=364-412 P regulation of progesterone biosynthetic process
C/D=364-412 P regulation of protein sumoylation
C/D=364-412 P regulation of transcription from RNA polymerase II promoter in response to hypoxia
C/D=364-412 P regulation of transcription, DNA-templated
C/D=364-412 P response to glucose
C/D=364-412 P response to hypoxia
C/D=364-412 P response to insulin
C/D=364-412 P response to ischemia
C/D=364-412 P skeletal muscle cell differentiation
C/D=364-412 P T cell differentiation
Sequences
Download file with secondary structure created by Stride  
1llm.pdb1.pdb:   [ download sequences in FASTA format ]
A (dna): 
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B (dna): 
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C (protein): 
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D (protein): 
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